6PU2A

Dark, mutant h275t , 100k, pcm myxobacterial phytochrome, p2
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 17-252 236 1-16, 253-481 16 229 knot
Chain Sequence
DLSQCDREPIHLLGGIQSHGVLLAFRGPDRLLEVVSANAQALLGRPPETLLGQPVGRVLPAEVLAQWEPLVARGSVRVVLPAGAYRALLHESDGLTVLELEPAELQPGMEETALEVVRRLVSPLAGVKGTQALLQTAADTVRALTGFDRVMVYRFDADWHGEVLAESKRGGMDGFLGMHFPATDIPVQARALYTRNPLRLIADARARPVPLLPPVVPALGRPLDLSNSALRSVSPVHLEYLRNMGVGASFSLSLLKEGVLWGLIACTHLEPLHISHERRRACEVLTQLLALQLSAEERAAEASEDAHRAALLGQLATAMGEGGTLEEVLEKESERVLALTGAAGVALLLGEEPLLVGCTPAQDEVEALVAWLATQPFQTSFHTDRLGTVYPPLAARADVAAGILAVRLAPAAARFAIWFRPEVARTISWAGNPRKPAEPEPGHQRLHPRGSFQAWEETVRDTSLPWKRADLGAAEGFRGAL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 15-291 277 1-14, 292-481 14 190 knot
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3.2m 13-246 234 1-12 256-481 247-255 12 226 slipknot
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4.1 10-255 246 1-9 261-481 256-260 9 221 slipknot
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3.2m 14-258 245 1-13 270-481 259-269 13 212 slipknot
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3.2m 14-270 257 1-13 292-481 271-291 13 190 slipknot
publication title High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
pubmed doi rcsb
structure length 481
molecule tags Signaling protein
source organism Stigmatella aurantiaca (strain dw4/3-1)
sequence length 481
total genus Genus: 139
molecule keywords Photoreceptor-histidine kinase BphP
ec nomenclature
pdb deposition date 2019-07-16
KnotProt deposition date 2019-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01590 GAF GAF domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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