6R7RA

Crystal structure of the glutamate transporter homologue glttk in complex with d-aspartate
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 163
Slipknot S +31 +31 +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 54-317 264 1-53 362-420 318-361 53 59 slipknot
Chain Sequence
YPVLWKILWGLVLGAVFGLIAGHFGYAGAVKTYIKPFGDLFVRLLKMLVMPIVLASLVVGAASISPARLGRVGVKIVVYYLATSAMAVFFGLIVGRLFNVGANVNLGSGTG----AQPPSLVQTLLNIVPTNPFASLAKGEVLPVIFFAIILGIAITYLMNRNEERVRKSAETLLRVFDGLAEAMYLIVGGVMQYAPIGVFALIAYVMAEQGVRVVGPLAKVVGAVYTGLFLQIVITYFILLKVFGIDPIKFIRKAKDAMITAFVTRSSSGTLPVTMRVAEEEMGVDKGIFSFTLPLGATINMDGTALYQGVTVLFVANAIGHPLTLGQQLVVVLTAVLASIGTAGVPGAGAIMLAMVLQSVGLDLTPGSPVALAYAMILGIDAILDMGRTMVNVTGDLAGTVIVAKTEKELDESKWISH
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 41-306 266 1-40 346-420 307-345 40 75 slipknot
view details
2.1 38-349 312 1-37 367-420 350-366 37 54 slipknot
view details
1.1 59-311 253 1-40, 326-420 41-58, 312-325 40 95 slipknot
view details
1.1 59-353 295 1-37, 366-420 38-58, 354-365 37 55 slipknot
view details
2.1 59-329 271 1-44, 343-420 45-58, 330-342 44 78 slipknot
sequence length 420
structure length 416
publication title Binding and transport of D-aspartate by the glutamate transporter homologue GltTk.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Proton/glutamate symporter, SDF family
source organism Thermococcus kodakarensis (strain atcc baa-918 / jcm 12380 / kod1)
missing residues 112-115
total genus Genus: 163
ec nomenclature
pdb deposition date 2019-03-29
KnotProt deposition date 2019-04-25
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling