6RAOI

Cryo-em structure of the anti-feeding prophage (afp) baseplate, 6-fold symmetrised
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 68
Knot K -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 207-267 61 1-206, 268-574 206 307 knot
Chain Sequence
TFLLEPRTGKGLLNLMAKYTEAVPFAGHTDADWKDFWMAGCTLEALSDIYQYPGLAEKKLPVQQAFLLALLHLLETPRAMLNTVPARHRSLYYRDLLGFAPRAPQPDSVAVSFTLQRNSSPYALPAGSLLDGGQDSAGNSITYQTDDSLLITGQQLEQL--------------------------------------------APELYLGFSGTSAQDTLSLYWSVRASSALDVTWWYYQGTKWQAVLANAMTATLNVAQAIDDSHFSQPLPANTINQLVTPVAAISD-----------------------------------------------------------------------VRQPLPSVGGQPRETEMAMLQRAAPRIAHRQRAITWNNMRSLLMEHYPEIFDVRFPDVDKLSRLPALEVQSLMVIPDGRALRPALSNGRLSRMAQWLSQYTSLWAAPTLKNPKYIDVTARYRVTFVVPDYGYRQLAAQLQHDYMPWATDRPGNQVDYYQLLATLQQSPLVQSVNALVLSHDTGKPTSMETQSTV------TARDD
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1m 206-315 110 1-205, 316-576 205 261 knot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling