6SJ9A

Proteasome accessory factor b/c (pafbc) of arthrobacter aurescens
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 183
Slipknot S -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 91-589 499 1-90 640-664 590-639 90 25 slipknot
Chain Sequence
GASRTERLLNLLLALLNTKVGLPRAVLREKVYHDSADNDVAFGRMFERDKVDLKQFGFEIETLMD--------PASARYRIGKDSNRLPDVSLTPAESTVLLLAAQLWERAALGSAAANAVDVDLPAGV----------QPRIKPAGQAFDDVVAAMHGKHPIRFGYQAVSTGREEVREVEPWGLGSRFGQWYLVGLDRGRGAKRVFRLSRMTTAISVLTTGSFHPPKDFNARAELDELNELPVRQATLVIDKDKLLALRKKATSLQDAPDESGRDRITVDFRDPEQLAEELASYGPHVKVTGPAELSAAVVRRLQAAADFDDAPLPPLEFPEAGRAPRARKRTSEDQLARMLQLVPFLVHHQGLHIQEVADHFGISRKALIDDLKILICSGLPEGYPDDLLDIQWENDHVYISEHLDLNRPVRFSEEEAAALLTGLAMLGDLPALAGGSGSALESVTIKLTGAAG----EAARLAGSVSGQSVAPEQAQAFAAITQAIREGRQLRLRYFSLQRDEVTERDVDPLRLYSLDSTWYFEAYCHSKAGVRNFRLDRVESLEPNGRAVSGSATAGQDFPARLFTPGEDDVLVCLELTRQGAGLADDYYAERTAPLPDGGLLAEVRFGDAGWLPMFVSQHGGSVRILEPESLRQETRAWIDAALVQYDS
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 95-587 493 1-94 612-664 588-611 94 53 slipknot
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2.1m 96-613 518 1-95 623-664 614-622 95 42 slipknot
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2.1m 93-630 538 1-92 643-664 631-642 92 22 slipknot
sequence length 664
structure length 642
publication title Structure and functional implications of WYL domain-containing bacterial DNA damage response regulator PafBC.
pubmed doi rcsb
molecule tags Transcription
molecule keywords Proteasome accessory factor B/C (PafBC)
source organism Paenarthrobacter aurescens
missing residues 66-73, 122-131, 449-452
total genus Genus: 183
ec nomenclature
pdb deposition date 2019-08-13
KnotProt deposition date 2019-10-26
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling