7LVN | KnotProt

Cysteine knot

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loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet3 start applet null

Jmol JavaScript applet jmolApplet3__296477317463536__ initializing

Jmol getValue debug null

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AppletRegistry.checkIn(jmolApplet3__296477317463536__)

vwrOptions:

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setting document base to "https://knotprot.cent.uw.edu.pl/view/7lvn/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

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java.version: 2018-01-28 23:38:52 (JSmol/j2s)

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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FileManager.getAtomSetCollectionFromFile(/static/knot_data/7lvn/A/7lvn_A_cysteine_knot.pdb.gz)

The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/static/knot_data/7lvn/A/7lvn_A_cysteine_knot.pdb.gz): 236 ms

reading 36 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

36 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 32 ms

Adding embedded #jmolscript: select ({0:35});backbone only;select *;

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Jmol script terminated

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Help Cysteine knot data interpretation Full screen

				Loop	Piercing
view details				3-c-10-b-23-c-18	17-b-30

Chain Sequence

GDCHKFLGWCRGEPDPCCEHLSCSRKHGWCVWDWTV

sequence length	36
structure length	36
publication title	Tarantula toxin omega-Avsp1a selectively inhibits human CaV3.1 and CaV3.3 rcsb
molecule tags	Toxin
molecule keywords	Omega-Avsp1a
ec nomenclature
pdb deposition date	2021-02-26

Image from the rcsb pdb (www.rcsb.org)

2M9LA 5EPMC 5T4RA 8CIQA 8CJPB 8CJQD 8CJRC 5WLXA
similar chains in the KnotProt database (40% sequence similarity)

9DBNB
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
2M9L A; 5EPM C; 5T4R A; 8CIQ A; 8CJP B; 8CJQ D; 8CJR C; 
#similar chains, but unknotted
5WLX A; 
#similar chains in the pdb database (40% sequence similarity)
9DBN B;

7LVNA

Cysteine knot

Chain Sequence