7S55 | KnotProt

Cysteine knot

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loadScript /static/js/j2s/core/corescript.z.js

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Jmol JavaScript applet jmolApplet3__203245457235587__ initializing

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AppletRegistry.checkIn(jmolApplet3__203245457235587__)

vwrOptions:

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setting document base to "https://knotprot.cent.uw.edu.pl/view/7s55/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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Viewer cachePut cache://localLOAD_/static/knot_data/7s55/A/7s55_A_cysteine_knot.pdb.gz

Viewer cachePut https://knotprot.cent.uw.edu.pl/static/knot_data/7s55/A/7s55_A_cysteine_knot.pdb.gz

FileManager.getAtomSetCollectionFromFile(/static/knot_data/7s55/A/7s55_A_cysteine_knot.pdb.gz)

The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/static/knot_data/7s55/A/7s55_A_cysteine_knot.pdb.gz): 1548 ms

reading 31 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

31 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 16 ms

Adding embedded #jmolscript: select ({0:30});backbone only;select *;

Help Cysteine knot data interpretation Full screen

				Loop	Piercing
view details				4-c-8-b-23-c-21	13-b-28

Chain Sequence

GIPCGESCVYIPCTVTALLGCSCKDKVCYKN

sequence length	31
structure length	31
publication title	Mutagenesis of cyclotide Cter 27 exemplifies a robust folding strategy for bracelet cyclotides doi rcsb
molecule tags	Antimicrobial protein
molecule keywords	Cliotide T10
ec nomenclature
pdb deposition date	2021-09-09

Image from the rcsb pdb (www.rcsb.org)

1NBJA 1VB8A 2KCGA 2KNMA 2KUXA
similar chains in the KnotProt database (40% sequence similarity)

7RIHB 7RIIA 7RIJA 7RN3A
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
1NBJ A; 1VB8 A; 2KCG A; 2KNM A; 2KUX A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)
7RIH B; 7RII A; 7RIJ A; 7RN3 A;

7S55A

Cysteine knot

Chain Sequence