8CJR | KnotProt

Cysteine knot

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Jmol JavaScript applet jmolApplet3__626760869955401__ initializing

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AppletRegistry.checkIn(jmolApplet3__626760869955401__)

vwrOptions:

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Jmol Version: 14.29.13 2018-04-17 17:17

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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FileManager.getAtomSetCollectionFromFile(/static/knot_data/8cjr/C/8cjr_C_cysteine_knot.pdb.gz)

The Resolver thinks Pdb

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Time for openFile(/static/knot_data/8cjr/C/8cjr_C_cysteine_knot.pdb.gz): 165 ms

reading 35 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

35 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 13 ms

Adding embedded #jmolscript: select ({0:34});backbone only;select *;

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Help Cysteine knot data interpretation Full screen

				Loop	Piercing
view details				2-c-9-b-21-c-16	15-b-29

Chain Sequence

ACREWLGGCSKDADCCAHLECRKKAPYHCVWDWTV

sequence length	35
structure length	35
publication title	Structure-function relationship of new peptides activating human Na v 1.1. pubmed doi rcsb
molecule tags	Toxin
molecule keywords	Mu-theraphotoxin-Cg1a
ec nomenclature
pdb deposition date	2023-02-13

Image from the rcsb pdb (www.rcsb.org)

2A2VA 8CIQA 8CJPB 8CJQD 8CJTA 3J5QA
similar chains in the KnotProt database (40% sequence similarity)

8CJSE 8FEYA 9EP7A
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
2A2V A; 8CIQ A; 8CJP B; 8CJQ D; 8CJT A; 
#similar chains, but unknotted
3J5Q A; 
#similar chains in the pdb database (40% sequence similarity)
8CJS E; 8FEY A; 9EP7 A;

8CJRC

Cysteine knot

Chain Sequence