4XDL | KnotProt

Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!

Knot K

Help Knotting data interpretation

		Knot core range	Knot core length	Knot tails range	N-end length	C-end length	Type
view details	- 3₁	96-240	145	1-95, 241-262	95	22	knot
view details	- 3₁	95-239	145	1-94, 240-261	94	22	knot
view details	- 3₁	96-240	145	1-95, 241-263	95	23	knot
view details	- 3₁	94-238	145	1-93, 239-262	93	24	knot
view details	- 3₁	95-240	146	1-94, 241-261	94	21	knot
view details	- 3₁	98-238	141	1-97, 239-260	97	22	knot
view details	- 3₁	98-240	143	1-97, 241-262	97	22	knot
view details	- 3₁	94-240	147	1-93, 241-261	93	21	knot

	Fingerprint	Knot forming loop	Loop type
knots details	K -3₁	Lys73 ... Thr172 <-> Bridging ionK602 <-> Thr281 ... Ile173 <-> Bridging ionK601 <-> Gly283 ... Chain closureLys333 <-> Lys73	probabilistic	color sequence
knots details	K -3₁	Lys73 ... Thr172 <-> Bridging ionK602 <-> Thr281 ... Gly174 <-> Bridging ionK601 <-> Gly283 ... Chain closureLys333 <-> Lys73	probabilistic	color sequence
knots details	K -3₁	Lys73 ... Thr172 <-> Bridging ionK602 <-> Thr281 ... Ile173 <-> Bridging ionK601 <-> Val282 ... Chain closureLys333 <-> Lys73	probabilistic	color sequence
knots details	K -3₁	Lys73 ... Thr172 <-> Bridging ionK602 <-> Thr281 ... Gly174 <-> Bridging ionK601 <-> Val282 ... Chain closureLys333 <-> Lys73	probabilistic	color sequence
knots details	K -3₁	Lys73 ... Glu113 <-> Bridging ionCd604 <-> Glu116 ... Thr172 <-> Bridging ionK602 <-> Thr281 ... Ile173 <-> Bridging ionK601 <-> Gly283 ... Chain closureLys333 <-> Lys73	probabilistic	color sequence
knots details	K -3₁	Lys73 ... Glu113 <-> Bridging ionCd604 <-> Glu116 ... Thr172 <-> Bridging ionK602 <-> Thr281 ... Gly174 <-> Bridging ionK601 <-> Gly283 ... Chain closureLys333 <-> Lys73	probabilistic	color sequence
knots details	K -3₁	Lys73 ... Glu113 <-> Bridging ionCd604 <-> Glu116 ... Thr172 <-> Bridging ionK602 <-> Thr281 ... Ile173 <-> Bridging ionK601 <-> Val282 ... Chain closureLys333 <-> Lys73	probabilistic	color sequence
knots details	K -3₁	Lys73 ... Glu113 <-> Bridging ionCd604 <-> Glu116 ... Thr172 <-> Bridging ionK602 <-> Thr281 ... Gly174 <-> Bridging ionK601 <-> Val282 ... Chain closureLys333 <-> Lys73	probabilistic	color sequence

Chain Sequence

KWKTVVAIFVVVVVYLVTGGLVFRALEQPFESSQKNTIALEKAEFLRDHVCVSPQELETLIQHALDADNAGVSPIGNSSNNSSHWDLGSAFFFAGTVITTIGYGNIAPSTEGGKIFCILYAIFGIPLFGFLLAGIGDQLGTIFGKSIARVEKVFRKKQVSQTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFVAGGNAGINYREWYKPLVWFWILVGLAYFAAVLSMIGDWLRVLSKK

How to cite

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling