2WSXA

Crystal structure of carnitine transporter from escherichia coli
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 132-324 193 325-496 1-95 96-131 95 171 slipknot
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41 91-357 267 1-90 413-496 358-412 90 84 slipknot
Chain Sequence
TGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGEEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKAVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNILNIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEDPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 50-351 302 1-49 368-496 352-367 49 129 slipknot
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4.1 52-367 316 1-51 402-496 368-401 51 95 slipknot
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3.2 74-361 288 1-14, 408-496 15-73, 362-407 14 89 slipknot
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3.2 38-407 370 1-15, 420-496 16-37, 408-419 15 77 slipknot
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3.2 53-407 355 1-37, 412-496 38-52, 408-411 37 85 slipknot
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3.2 53-411 359 1-37, 420-496 38-52, 412-419 37 77 slipknot
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4.1 55-407 353 1-52, 412-496 53-54, 408-411 52 85 slipknot
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3.2 55-411 357 1-52, 417-496 53-54, 412-416 52 80 slipknot
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3.2 81-361 281 1-73, 408-496 74-80, 362-407 73 89 slipknot
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4.1 82-360 279 1-51, 386-496 52-81, 361-385 51 111 slipknot
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4.1 82-385 304 1-80, 408-496 81-81, 386-407 80 89 slipknot
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4.1 83-398 316 1-55, 415-496 56-82, 399-414 55 82 slipknot
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4.1 86-398 313 1-82, 414-496 83-85, 399-413 82 83 slipknot
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4.1 90-387 298 1-81, 411-496 82-89, 388-410 81 86 slipknot
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4.1 90-410 321 1-85, 414-496 86-89, 411-413 85 83 slipknot
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4.1 94-387 294 1-89, 411-496 90-93, 388-410 89 86 slipknot
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4.1 94-410 317 1-89, 415-496 90-93, 411-414 89 82 slipknot
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2.1 105-476 372 1-89, 493-496 90-104, 477-492 89 4 slipknot
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2.1 111-418 308 1-91, 453-496 92-110, 419-452 91 44 slipknot
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2.1 114-330 217 1-101, 344-496 102-113, 331-343 101 153 slipknot
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1.1 125-347 223 1-102, 361-496 103-124, 348-360 102 136 slipknot
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3.1 126-420 295 1-110, 446-496 111-125, 421-445 110 51 slipknot
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3.1 128-326 199 1-114, 348-496 115-127, 327-347 114 149 slipknot
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2.1 138-419 282 420-496 1-120 121-137 120 76 slipknot
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2.1 137-331 195 1-127, 345-496 128-136, 332-344 127 152 slipknot
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1.1 140-347 208 1-127, 361-496 128-139, 348-360 127 136 slipknot
publication title Structural Basis of Na(+)-Independent and Cooperative Substrate/Product Antiport in Cait.
pubmed doi rcsb
structure length 496
molecule tags Transport protein
sequence length 496
molecule keywords L-CARNITINE/GAMMA-BUTYROBETAINE ANTIPORTER
ec nomenclature
pdb deposition date 2009-09-10
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02028 BCCT BCCT family transporter
Image from the rcsb pdb (www.rcsb.org)
2WSWA 4M8JA 3HFXA 2WSXA
similar chains in the KnotProt database (40% sequence similarity)
2WSXB 2WSXC
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 2WSW A;  4M8J A;  3HFX A;  2WSX A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 2WSX B;  2WSX C; 
           

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