5AP8A

Structure of the sam-dependent rrna:acp-transferase tsr3 from s. solfataricus
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 38-81 44 1-37, 82-160 37 79 knot
Chain Sequence
MKVYIIDY---------GKKLVKLKIAEFTRVGKGVVLDPFAQITLSNKDKDIVRRIGITIVDTSWNNTSQSEFKNIRGEHRRIPILFAGNPIHYGIAYKLSSIEALIATLYIVDEVEEAIKLSNVVKWGHTFIELNKELLEAYKNKTEEDIKKIEREII
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 28-74 47 1-27, 75-151 27 77 knot
view details
3.1 29-120 92 1-27, 126-151 28-28, 121-125 27 26 slipknot
sequence length 160
structure length 151
publication title Ribosome Biogenesis Factor Tsr3 is the Aminocarboxypropyl Transferase Responsible for 18S Rrna Hypermodification in Yeast and Humans
doi rcsb
molecule tags Transferase
molecule keywords TSR3
source organism Sulfolobus solfataricus
missing residues 9-17
ec nomenclature
pdb deposition date 2015-09-14
KnotProt deposition date 2016-04-27
Image from the rcsb pdb (www.rcsb.org)
5AP8A
similar chains in the KnotProt database (40% sequence similarity)
5AP8B 5AP8C
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5AP8 A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5AP8 B;  5AP8 C; 
           

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