5HSQA

The surface engineered photosensory module (pas-gaf-phy) of the bacterial phytochrome agp1 (atbphp1) in the pr form, chromophore modelled with an endocyclic double bond in pyrrole ring a.
Knot K 41
Knot core rangeKnot core lengthKnot tails rangeSlipknot tails rangeSlipknot loops rangeN-end lengthC-end lengthType
view details
41 15-249 235 1-14, 250-488 14 239 knot
Chain Sequence
LDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGAASNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAAAWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSELHGSWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIGIVLRKTEE
sequence length 488
structure length 488
publication title Structure of the photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form at 1.85 Angstroms resolution
rcsb
molecule tags Signaling protein
molecule keywords Bacteriophytochrome protein
source organism Agrobacterium fabrum
ec nomenclature
pdb deposition date2016-01-26
KnotProt deposition date2016-08-03
Image from the rcsb pdb (www.rcsb.org)
5HSQA 5I5LA 4R6LA 4R70A 4S21A
similar chains in the KnotProt database (40% sequence similarity)
4R70B 4S21B 4R6LB
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5HSQ A;  5I5L A;  4R6L A; 
               
               
#similar chains, but unknotted
 4R70 A;  4S21 A;                               
               
           
#similar chains in the pdb database (40% sequence similarity)
 4R70 B;  4S21 B;  4R6L B; 
           

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