5HSQA

The surface engineered photosensory module (pas-gaf-phy) of the bacterial phytochrome agp1 (atbphp1) in the pr form, chromophore modelled with an endocyclic double bond in pyrrole ring a.
Knot K 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
41 15-249 235 1-14, 250-488 14 239 knot
Chain Sequence
LDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGAASNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAAAWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSELHGSWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIGIVLRKTEE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
4.1 14-286 273 1-13, 287-488 13 202 knot
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3.2m 14-245 232 1-13 253-488 246-252 13 236 slipknot
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3.2m 14-255 242 1-13 266-488 256-265 13 223 slipknot
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3.2m 13-267 255 1-12 287-488 268-286 12 202 slipknot
view details
3.2 17-460 444 461-488 1-13 14-16 13 27 slipknot
sequence length 488
structure length 488
publication title Structure of the photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form at 1.85 Angstroms resolution
rcsb
molecule tags Signaling protein
molecule keywords Bacteriophytochrome protein
source organism Agrobacterium fabrum
ec nomenclature
pdb deposition date 2016-01-26
KnotProt deposition date 2016-08-03
Image from the rcsb pdb (www.rcsb.org)
5HSQA 5I5LA 4R6LA 4R70A 4S21A
similar chains in the KnotProt database (40% sequence similarity)
4R70B 4S21B 4R6LB
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5HSQ A;  5I5L A;  4R6L A; 
               
               
#similar chains, but unknotted
 4R70 A;  4S21 A;                               
               
           
#similar chains in the pdb database (40% sequence similarity)
 4R70 B;  4S21 B;  4R6L B; 
           

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