5K5BA

Wild-type pas-gaf fragment from deinococcus radiodurans bphp
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K 41 41
Knot core rangeKnot core lengthKnot tails rangeSlipknot tails rangeSlipknot loops rangeN-end lengthC-end lengthType
view details
41 28-267 240 1-27, 268-316 27 49 knot
Chain Sequence
PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPA--HLSLTVHRVGELLILEFEPTELR---------NAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAL
sequence length 316
structure length 305
publication title The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography.
pubmed doi rcsb
molecule tags Transferase
molecule keywords Bacteriophytochrome
source organism Deinococcus radiodurans
missing residues 102-103, 125-133
ec nomenclature
pdb deposition date2016-05-23
KnotProt deposition date2016-11-06
Image from the rcsb pdb (www.rcsb.org)
4CQHA 4Q0HA 3S7OA 4Z1WA 5K5BA 2O9CA 4ZRRA 4Y5FA 4O8GA 3S7PA 4Q0IA 4Y3IA 3S7QA 4IJGA 4E04A 5L8MA 2O9BA 5LBRA 2OOLA 3S7NA 1ZTUA
similar chains in the KnotProt database (40% sequence similarity)
5AJGA 5MG0A 4E04B 2OOLB 4RQ9A 4RPWA
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 4CQH A;  4Q0H A;  3S7O A;  4Z1W A;  5K5B A;  2O9C A;  4ZRR A;  4Y5F A;  4O8G A;  3S7P A;  4Q0I A;  4Y3I A;  3S7Q A;  4IJG A;  4E04 A;  5L8M A;  2O9B A;  5LBR A;  2OOL A;  3S7N A;  1ZTU A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5AJG A;  5MG0 A;  4E04 B;  2OOL B;  4RQ9 A;  4RPW A; 
           

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