5KELA

Ebov gp in complex with variable fab domains of iggs c2g4 and c13c6
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 76-139 64 1-75 143-276 140-142 75 134 slipknot
Chain Sequence
IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILP---------------------PSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNRKIRSEELSF
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
1.1 81-138 58 1-74, 144-235 75-80, 139-143 74 92 slipknot
sequence length 276
structure length 235
publication title Structures of Ebola virus GP and sGP in complex with therapeutic antibodies.
pubmed doi rcsb
molecule tags Viral protein/immune system
molecule keywords Ebola surface glycoprotein, GP1
source organism Zaire ebolavirus (strain mayinga-76)
missing residues 156-176, 247-266
ec nomenclature
pdb deposition date 2016-06-09
KnotProt deposition date 2016-09-07
Image from the rcsb pdb (www.rcsb.org)
3CSYI 5KELA
similar chains in the KnotProt database (40% sequence similarity)
6F5UA 6F6NA 6G9IA 6G95A 6G9BA 6F6SA 5JQ3A 6F6IA 5JQBA 5JQ7A 3CSYK 3CSYM 3CSYO 5FHCK 5KELE 5KELF
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 3CSY I;  5KEL A; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 6F5U A;  6F6N A;  6G9I A;  6G95 A;  6G9B A;  6F6S A;  5JQ3 A;  6F6I A;  5JQB A;  5JQ7 A;  3CSY K;  3CSY M;  3CSY O;  5FHC K;  5KEL E;  5KEL F; 
           

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