5LBRA

Wild-type pas-gaf fragment from deinococcus radiodurans bphp collected at sacla
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 29-267 239 1-28, 268-316 28 49 knot
Chain Sequence
PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWP---HLSLTVHRVGELLILEFEPTELRN---------AMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 26-295 270 1-25, 296-304 25 9 knot
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3.2m 27-251 225 1-26 261-304 252-260 26 44 slipknot
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3.2m 28-263 236 1-27 296-304 264-295 27 9 slipknot
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4.1 24-260 237 1-12, 264-304 13-23, 261-263 12 41 slipknot
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3.2 30-292 263 293-304 1-25 26-29 25 11 slipknot
view details
3.2 31-294 264 295-304 1-29 30-30 29 9 slipknot
missing residues 101-103, 125-133
publication title The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography.
pubmed doi rcsb
structure length 304
molecule tags Transferase
source organism Deinococcus radiodurans
sequence length 316
molecule keywords Bacteriophytochrome
ec nomenclature
pdb deposition date 2016-06-17
KnotProt deposition date 2016-11-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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