5LRMA

Structure of di-zinc mcr-1 in p41212 space group
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31
Knot core rangeKnot core lengthKnot tails rangeSlipknot tails rangeSlipknot loops rangeN-end lengthC-end lengthType
view details
+31 25-247 223 1-24 276-323 248-275 24 48 slipknot
Chain Sequence
TIYHAKDAVQATKPDMRKPRLVVFVVGETARADHVSFNGYERDTFPQLAKIDGVTNFSNVTSCGTSTAYSVPCMFSYLGADEYDVDTAKYQENVLDTLDRLGVSILWRDNNSDSKGVMDKLPKAQFADYKSATNNAICNTNPYNECRDVGMLVGLDDFVAANNGKDMLIMLHQMGNHGPAYFKRYDEKFAKFTPV-----------QSLINAYDNALLATDDFIAQSIQWLQTHSNAYDVSMLYVSDHGESLGENGVYLHGMPNAFAPKEQRSVPAFFWTDKQTGITPMATDTVLTHDAITPTLLKLFDVTADKVKDRTAFIR
sequence length 323
structure length 312
publication title Structure of the catalytic domain of MCR-1
rcsb
molecule tags Transferase
molecule keywords phosphatidylethanolamine transferase Mcr-1
source organism Escherichia coli
missing residues 196-206
ec nomenclature
pdb deposition date2016-08-19
KnotProt deposition date2016-12-15
Image from the rcsb pdb (www.rcsb.org)
5K4PA 4KAVA 5GRRA 4KAYA 5LRMA 5GOVA 5LRNA
similar chains in the KnotProt database (40% sequence similarity)
5LRNB 4KAYB 5GOVB
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5K4P A;  4KAV A;  5GRR A;  4KAY A;  5LRM A;  5GOV A; 
               
               
#similar chains, but unknotted
 5LRN A;                               
               
           
#similar chains in the pdb database (40% sequence similarity)
 5LRN B;  4KAY B;  5GOV B; 
           

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