5M8JA

Crystal structure of eremococcus coleocola manganese transporter mutant h236a
Slipknot S 41 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 58-228 171 229-494 1-37 38-57 37 265 slipknot
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41 31-273 243 1-30 330-494 274-329 30 165 slipknot
Chain Sequence
DLSLSDINSTVEVPEGHSFWKTLLAYSGPGALVAVGYMDPGNWSTSITGGQNFQYLLLSIIVISSLLAMLLQNMAAKLGIVCQLDLAQAIRARTSRRLGFIFWILTELAIMATDIAEVIGAAIALYLLFKIPIFLAVVITVLDVFLLLLLNRIGFRKIEALVVCLIFVILFVFLYQIILSQPAWHQVAKGLIPSWASVQTSPKIGGQTPLSASLGIIGATIMPANLFLHSAISQSRKIDRTDSSKVAEAVRFSNWDSNIQLSLAMVVNALLLIMGVAVFKSGAVQDPSFFGLYQALSNPDMVSNPVLAEAARSGVLSTLFAVALLASGQNSTITGTITGQVIMEGFIHLRLPLWLRRLVTRLIAIIPVVVCVAITSHQGSLDEHQALNNLMNNSQVFLALALPFSIVPLLMLTDSAAQMGNQFKNTRWVKVMGWLTVIILTLLNLISISSQIAGFFGDNPSSQDLLLSQVISIGIILAMIGLLIWTIIDIRRFT
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5



Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 28-292 265 1-27 320-494 293-319 27 175 slipknot
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3.2 30-319 290 1-4, 332-494 5-29, 320-331 4 163 slipknot
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3.2 30-331 302 1-4, 344-494 5-29, 332-343 4 151 slipknot
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4.1 29-277 249 1-6, 293-494 7-28, 278-292 6 202 slipknot
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3.2 31-316 286 1-27, 324-494 28-30, 317-323 27 171 slipknot
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3.2 37-308 272 1-27, 323-494 28-36, 309-322 27 172 slipknot
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3.2 37-322 286 1-30, 326-494 31-36, 323-325 30 169 slipknot
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3.2 38-305 268 1-27, 315-494 28-37, 306-314 27 180 slipknot
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3.2 38-316 279 1-36, 323-494 37-37, 317-322 36 172 slipknot
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1.1 47-260 214 1-32, 272-494 33-46, 261-271 32 223 slipknot
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2.1 51-429 379 430-494 1-33 34-50 33 64 slipknot
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2.1 48-228 181 1-34, 247-494 35-47, 229-246 34 248 slipknot
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2.1 61-346 286 1-35, 395-494 36-60, 347-394 35 100 slipknot
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3.1 54-238 185 1-45, 253-494 46-53, 239-252 45 242 slipknot
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2.1 55-238 184 1-53, 253-494 54-54, 239-252 53 242 slipknot
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2.1 56-238 183 1-54, 253-494 55-55, 239-252 54 242 slipknot
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2.1 65-440 376 441-494 1-50 51-64 50 53 slipknot
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2.1 63-406 344 1-51, 437-494 52-62, 407-436 51 58 slipknot
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3.1 64-233 170 1-53, 253-494 54-63, 234-252 53 242 slipknot
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2.1 64-252 189 1-53, 262-494 54-63, 253-261 53 233 slipknot
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2.1 64-232 169 1-54, 234-494 55-63, 233-233 54 261 slipknot
sequence length 494
structure length 494
publication title Structural and mechanistic basis of proton-coupled metal ion transport in the SLC11/NRAMP family.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Divalent metal cation transporter MntH
source organism Eremococcus coleocola acs-139-v-col8
ec nomenclature
pdb deposition date 2016-10-29
KnotProt deposition date 2017-01-27
Image from the rcsb pdb (www.rcsb.org)
5M87A 5M8JA 5M8KA 5M8AA
similar chains in the KnotProt database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5M87 A;  5M8J A;  5M8K A;  5M8A A; 
               
               
           

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