5OQLe

Cryo-em structure of the 90s pre-ribosome from chaetomium thermophilum
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 156-201 46 1-155, 202-229 155 28 knot
Chain Sequence
HVPIPPNDKDTKRLIVVLSNASLETYK--------------YTLLNSDEHIGIMRKMNRDISDARPDITHQCLLTLLDSPINKAGKLQIYIQTAKGVLIEVSPTVRIPRTFKRFAGLMVQLLHRLSIKGTNTNEKLLKVIQNPITDHLPPNCRKVTLSFDAPLVRVRDYVDTLGPNESICVFVGAMAKGPDNFADAYVDEKISISNYSLSASVACSKFCHACEDAWDII
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 142-189 48 1-141, 190-215 141 26 knot
view details
2.1 140-185 46 1-139 191-215 186-190 139 25 slipknot
missing residues 28-41
publication title 3.2- Angstrom -resolution structure of the 90S preribosome before A1 pre-rRNA cleavage.
pubmed doi rcsb
structure length 215
molecule tags Ribosome
sequence length 229
molecule keywords Periodic tryptophan protein 2-like protein
ec nomenclature
pdb deposition date 2017-08-12
KnotProt deposition date 2017-10-11
Image from the rcsb pdb (www.rcsb.org)
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