5OQLe

Cryo-em structure of the 90s pre-ribosome from chaetomium thermophilum
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 156-201 46 1-155, 202-229 155 28 knot
Chain Sequence
HVPIPPNDKDTKRLIVVLSNASLETYK--------------YTLLNSDEHIGIMRKMNRDISDARPDITHQCLLTLLDSPINKAGKLQIYIQTAKGVLIEVSPTVRIPRTFKRFAGLMVQLLHRLSIKGTNTNEKLLKVIQNPITDHLPPNCRKVTLSFDAPLVRVRDYVDTLGPNESICVFVGAMAKGPDNFADAYVDEKISISNYSLSASVACSKFCHACEDAWDII
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 142-189 48 1-141, 190-215 141 26 knot
view details
2.1 140-185 46 1-139 191-215 186-190 139 25 slipknot
missing residues 28-41
publication title 3.2- Angstrom -resolution structure of the 90S preribosome before A1 pre-rRNA cleavage.
pubmed doi rcsb
structure length 215
molecule tags Ribosome
sequence length 229
molecule keywords Periodic tryptophan protein 2-like protein
ec nomenclature
pdb deposition date 2017-08-12
KnotProt deposition date 2017-10-11
Image from the rcsb pdb (www.rcsb.org)
5FAIA 3OIIA 3OINA 2V3KA 2V3JA 3OIJA 5OQLe 5WYKE1 5JPQe
similar chains in the KnotProt database (40% sequence similarity)
3OIIB 3OINB 3OIJB 5OQLf 5WLCSJ 5WLCSK 5WYJE1 5WYJE2 5WYKE2 5TZSj 5TZSk 5JPQf
similar chains in the pdb database (40% sequence similarity)

 
            
               
#similar chains in the KnotProt database (40% sequence similarity)
 5FAI A;  3OII A;  3OIN A;  2V3K A;  2V3J A;  3OIJ A;  5OQL e;  5WYK E1;  5JPQ e; 
               
               
           
#similar chains in the pdb database (40% sequence similarity)
 3OII B;  3OIN B;  3OIJ B;  5OQL f;  5WLC SJ;  5WLC SK;  5WYJ E1;  5WYJ E2;  5WYK E2;  5TZS j;  5TZS k;  5JPQ f; 
           

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