5Z79A

Crystal structure analysis of the hppk-dhps in complex with substrates
Warning
  • Chain breaks within knot 61 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 203
Knot K -61 -31 -31 -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-61 5-274 270 1-4, 275-707 4 433 knot
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-31 56-210 155 1-14, 250-707 15-55, 211-249 14 458 slipknot
Chain Sequence
TPRNIAVLNFGTNDKKNCVTILETALYLTEKYLGKIINSSYIYETVPEYIV----------------RDISWIGDLIPTVENSRYEESEDLIYECKELEVFLKNEKINESIIREVSVEDYENEARRIIKRNDEIMKKNLTSYFFNLTVVVRTFVE--------DPLAMLVILKYIEQIMKNRMIDIDILFFNNYTIFEKSISLK-------------GEDIYKIITKYIHINHTSDQNRLDIIQNLGDKIEFLCIPHVYTKYRYSILLCLNDIIPEYKHSTFEEAIRSTYNSYVESFEEKYHINIRKNNKRLYVLKDKVSYLKERTHIVGILNVNYDSFSDGGLFVDPVKAVERMFEMASDGASVIDIGGESSAPYVVPNPSVTERDLVMPVLKLFKEEWHKLECEVGGGAVSSLQGKLQKVRDAKPIISIDTVNYDLFKECVEGELVD-------------ILNDISACTHNPEIIKLLRRKNKFYSVVLMHKRGNPHTMDKLTNYDDLISDIKRYLEDRLHFLVLNGVPRYRVLFDVGLGFAKKHDQSIKLLQHIHVYDEYPLFLGYSRKRFIVHCMWRFKMSHMRQDKDQLLYQKNICGGLAIASYSFYKKVDLIRVHDVLETKAV---------------------------------------------------------------------LDVLTRIHQ
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.3m 24-163 140 1-12, 210-707 13-23, 164-209 12 498 slipknot
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2.1m 32-210 179 1-14, 249-707 15-31, 211-248 14 459 slipknot
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2.1m 32-248 217 1-14, 252-707 15-31, 249-251 14 456 slipknot
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2.1m 41-210 170 1-31, 249-707 32-40, 211-248 31 459 slipknot
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2.1m 41-248 208 1-15, 254-707 16-40, 249-253 15 454 slipknot
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2.1m 43-210 168 1-40, 249-707 41-42, 211-248 40 459 slipknot
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2.1m 43-248 206 1-40, 254-707 41-42, 249-253 40 454 slipknot
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2.3m 28-194 167 1-23, 204-707 24-27, 195-203 23 504 slipknot
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2.3m 37-194 158 1-27, 204-707 28-36, 195-203 27 504 slipknot
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3.2m 38-326 289 1-20, 440-707 21-37, 327-439 20 268 slipknot
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3.2m 35-296 262 1-22, 306-707 23-34, 297-305 22 402 slipknot
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1.1m 51-157 107 1-32, 205-707 33-50, 158-204 32 503 slipknot
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2.1m 51-204 154 1-32, 211-707 33-50, 205-210 32 497 slipknot
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3.1m 47-210 164 1-42, 252-707 43-46, 211-251 42 456 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling