| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 116-189 | 74 | 1-115 | 204-470 | 190-203 | 115 | 267 | slipknot |
Chain Sequence |
SAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKGPFKFGLWGVALYGVLPSQIAKDDPNMMSKIVTSLPADDITESPVSSLPLDKATVNVNVRVVDDVKDERQNISVVSGVPMSCPVVDAKPTERPGVFTASIPGAPVLNISVNNSTPAVQTLSPGVTNNTDKDVRPAGFTQGGNTRDAVIRFPKDSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKGFKDYGHDYHPAPKTENIKGLGDLKPGIPKTPKQNGGGKRKRWTGDKGRKIYEWDSQHGELEGYRASDGQHLGSFDPKTGNQLKGPDPKRNIKKYL
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 28-189 | 162 | 1-27 | 204-470 | 190-203 | 27 | 267 | slipknot | ||
| view details |
|
2.1 | 74-190 | 117 | 1-56, 198-470 | 57-73, 191-197 | 56 | 273 | slipknot | |||
| view details |
 |
3.1 | 64-197 | 134 | 1-57, 201-470 | 58-63, 198-200 | 57 | 270 | slipknot | |||
| view details |
|
2.1 | 71-197 | 127 | 1-63, 201-470 | 64-70, 198-200 | 63 | 270 | slipknot | |||
| view details |
|
3.1 | 74-198 | 125 | 1-62, 205-470 | 63-73, 199-204 | 62 | 266 | slipknot | |||
| view details |
|
3.1 | 114-191 | 78 | 1-107, 203-470 | 108-113, 192-202 | 107 | 268 | slipknot |
| sequence length |
470
|
| structure length |
470
|
| publication title |
Crystal Structure Of Colicin E3 In Complex With Its Immunity Protein
rcsb |
| molecule tags |
Ribosome inhibitor, hydrolase
|
| molecule keywords |
Colicin E3
|
| source organism |
Escherichia coli
|
| total genus |
 Genus: 142
|
| ec nomenclature |
ec
3.1.-.-: |
| pdb deposition date | 2005-09-29 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06958 | Pyocin_S | S-type Pyocin |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix Hairpins | ||
| Alpha Beta | Roll | Ribonuclease domain of colicin e3 (Residues 456-551) | Ribonuclease domain of colicin E3 |
#chains in the KnotProt database with same CATH superfamily 1JCH A; 2B5U A; #chains in the KnotProt database with same CATH topology 1JCH A; 2B5U A; 1P49 A; #chains in the KnotProt database with same CATH homology 1JCH A; 2B5U A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
