2O9CA

Crystal structure of bacteriophytochrome chromophore binding domain at 1.45 angstrom resolution
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 30-271 242 1-29, 272-319 29 48 knot
Chain Sequence
DPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVKEAH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 26-309 284 1-25, 310-319 25 10 knot
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4.1 8-274 267 1-7 281-319 275-280 7 39 slipknot
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4.1 28-279 252 1-27 290-319 280-289 27 30 slipknot
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3.2m 30-281 252 1-29 310-319 282-309 29 10 slipknot
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4.1 17-274 258 1-8, 280-319 9-16, 275-279 8 40 slipknot
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4.1 26-273 248 1-20, 280-319 21-25, 274-279 20 40 slipknot
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3.2m 30-267 238 1-22, 279-319 23-29, 268-278 22 41 slipknot
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3.2 34-312 279 313-319 1-27 28-33 27 6 slipknot
publication title High resolution structure of deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution.
pubmed doi rcsb
structure length 319
molecule tags Transferase
source organism Deinococcus radiodurans
sequence length 319
total genus Genus: 91
molecule keywords Bacteriophytochrome
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2006-12-13
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01590 GAF GAF domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.450.40 Alpha Beta 2-Layer Sandwich Beta-Lactamase Beta-Lactamase 2o9cA02
2O9CA 2O9BA 1ZTUA
chains in the KnotProt database with same CATH superfamily
2O9CA 2O9BA 1ZTUA
chains in the KnotProt database with same CATH topology
2O9CA 2O9BA 1ZTUA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2O9C A;  2O9B A;  1ZTU A; 
#chains in the KnotProt database with same CATH topology
 2O9C A;  2O9B A;  1ZTU A; 
#chains in the KnotProt database with same CATH homology
 2O9C A;  2O9B A;  1ZTU A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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