4RQ9A

Crystal structure of the chromophore-binding domain of stigmatella aurantiaca bacteriophytochrome (thr289his mutant) in the pr state
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 11-261 251 1-10, 262-304 10 43 knot
Chain Sequence
TNCDREPIHIPGAIQPHGVLLVLSEPGLVLTHASENAPAVLGNSAEQLLGAPLGHFIEPSVREPLEADLRSARLKQLNPLKVVWRVDGVDRFFDGIAHRHQGRLILELEPSSHREAVPFLSFFHAVRDGLSRLRDARDLQELCEAVVQEVRGLTGFDRAIIYRFDAEWNGSVIAEARDARADPYLGLHFPASDIPRQARELYQLNWLRIIPTIDYQPARVRALPGHGEPLDLSFSVLRSVSPIHLEYLHNMGVQASMSISLMKDGKLWGLISCHQVSGTRYVPYEVRTACEFLGEVMSSLLAAK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 11-300 290 1-10, 301-304 10 4 knot
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3.2m 11-254 244 1-10 263-304 255-262 10 42 slipknot
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4.1 8-262 255 1-7 268-304 263-267 7 37 slipknot
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3.2m 13-264 252 1-12 275-304 265-274 12 30 slipknot
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3.2m 11-274 264 1-10 276-304 275-275 10 29 slipknot
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3.2m 12-280 269 1-11 301-304 281-300 11 4 slipknot
publication title Crystal structure of the chromophore-binding domain of Stigmatella aurantiaca bacteriophytochrome (Thr289His mutant) in the Pr state
rcsb
structure length 304
molecule tags Signaling protein
source organism Stigmatella aurantiaca
sequence length 304
total genus Genus: 96
molecule keywords Photoreceptor-histidine kinase BphP
ec nomenclature
pdb deposition date 2014-10-31
KnotProt deposition date 2018-09-05
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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