5C5KA

Structure of the pfr form of a canonical phytochrome
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 29-268 240 1-28, 269-496 28 228 knot
Chain Sequence
PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWPAGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWGG------KDDLGPRHSWDTYLEEKRGYAEPWHPGEIEEAQDLRDTLTGAL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 27-309 283 1-26, 310-496 26 187 knot
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3.2m 27-264 238 1-26 273-496 265-272 26 224 slipknot
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3.2m 27-274 248 1-26 285-496 275-284 26 212 slipknot
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3.2m 26-284 259 1-25 286-496 285-285 25 211 slipknot
view details
3.2m 27-287 261 1-26 310-496 288-309 26 187 slipknot
missing residues 448-453
publication title Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion.
pubmed doi rcsb
structure length 490
molecule tags Transferase
source organism Deinococcus radiodurans
sequence length 496
total genus Genus: 130
molecule keywords Bacteriophytochrome
ec nomenclature
pdb deposition date 2015-06-20
KnotProt deposition date 2018-09-12
Image from the rcsb pdb (www.rcsb.org)
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