5VIQ | KnotProt

Genus: 92

Knot K 4₁ 4₁

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				4₁	11-252	242	1-10, 253-296			10	44	knot

Chain Sequence

NCEHEEIHLAGSIQPHGALLVVSEHDHRVIQASANAAEFLNLGSVLGVPLAEIDGDLLIKILPHLDPTAEGMPVAVRCRIGNPSTEYCGLMHRPPEGGLIIELERAGPSIDLSGTLAPALERIRTAGSLRALCDDTVLLFQQCTGYDRVMVYRFDEQGHGLVFSECHVPGLESYFGNRYPSSFIPQMARQLYVRQRVRVLVDVTYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQFLKDMGVRATLAVSLVVGGKLWGLVVCHHYLPRFIRFELRAICKRLAERIATRITALE

Whole chain analysis

Help Knotoid data interpretation Full screen

Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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Jmol Version: 14.29.13 2018-04-17 17:17

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Help Knotoid subchains data interpretation Full screen

		Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details	4.1	10-289	280	1-9, 290-296			9	7	knot
view details	3.2m	11-246	236	1-10	256-296	247-255	10	41	slipknot
view details	3.2m	11-258	248	1-10	290-296	259-289	10	7	slipknot

sequence length	296
structure length	296
publication title	Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies. pubmed doi rcsb
molecule tags	Fluorescent protein
molecule keywords	monomeric near-infrared fluorescent protein miRFP709
source organism	Rhodopseudomonas palustris
total genus	Genus: 92
ec nomenclature
pdb deposition date	2017-04-17
KnotProt deposition date	2018-09-13

Image from the rcsb pdb (www.rcsb.org)

4GW9A 4XTQA 5VIKA 5VIVA
similar chains in the KnotProt database (40% sequence similarity)

5OY5A
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
4GW9 A; 4XTQ A; 5VIK A; 5VIV A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)
5OY5 A;

5VIQA

Knot K 41 41

Chain Sequence

Knot K 4₁ 4₁