5VIQA

Crystal structure of monomeric near-infrared fluorescent protein mirfp709
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 11-252 242 1-10, 253-296 10 44 knot
Chain Sequence
NCEHEEIHLAGSIQPHGALLVVSEHDHRVIQASANAAEFLNLGSVLGVPLAEIDGDLLIKILPHLDPTAEGMPVAVRCRIGNPSTEYCGLMHRPPEGGLIIELERAGPSIDLSGTLAPALERIRTAGSLRALCDDTVLLFQQCTGYDRVMVYRFDEQGHGLVFSECHVPGLESYFGNRYPSSFIPQMARQLYVRQRVRVLVDVTYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQFLKDMGVRATLAVSLVVGGKLWGLVVCHHYLPRFIRFELRAICKRLAERIATRITALE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 10-289 280 1-9, 290-296 9 7 knot
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3.2m 11-246 236 1-10 256-296 247-255 10 41 slipknot
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3.2m 11-258 248 1-10 290-296 259-289 10 7 slipknot
publication title Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies.
pubmed doi rcsb
structure length 296
molecule tags Fluorescent protein
source organism Rhodopseudomonas palustris
sequence length 296
total genus Genus: 92
molecule keywords monomeric near-infrared fluorescent protein miRFP709
ec nomenclature
pdb deposition date 2017-04-17
KnotProt deposition date 2018-09-13
Image from the rcsb pdb (www.rcsb.org)
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