5ZEP0

M. smegmatis hibernating state 70s ribosome structure
Warning
  • Chain breaks within knot 820 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 36
Knot K 82 +31 +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 230-172 -57 1-229, 173-459 229 286 slipknot
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82 46-355 310 1-45, 356-459 45 104 knot
Chain Sequence
XXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------XXX
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1*31 20-355 336 1-19, 356-459 19 104 knot
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3.1 20-200 181 1-19 346-459 201-345 19 114 slipknot
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3.1 20-346 327 1-19 354-459 347-353 19 106 slipknot
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3.1 167-355 189 356-459 1-100 101-166 100 103 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling