| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 24-251 | 228 | 1-23, 252-258 | 23 | 7 | knot |
Chain Sequence |
DQSHWRYGGDPPWPRVSPACAGRFQSPVDIRPQLAAFCPALRPLELLGFQLPPLPELRLRNNGHSVQLTLPPGLEMALGPGREYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLSTAFARVDEALGRPGGLAVLAAFLEEGPEENSAYEQLLSRLEEIAEEGSETQVPGLDISALLPSDFSRYFQYEGSLTTPPCAQGVIWTVFNQTVMLSAKQLHTLSDTLWGPGDSRLQLNFRATQPLNGRVIEASFPAGV
|
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
+ 31 | 23-251 | 229 | 1-22, 252-258 | 22 | 7 | knot |
| Fingerprint | Knot forming loop | Loop type | ||||
|---|---|---|---|---|---|---|
|
|
K +31 | Asp137 ... His226 <-> Bridging ionZn504 <-> His228 ... Chain closureVal394 <-> Asp137 |
probabilistic | |||
|
|
K +31 | Asp137 ... His228 <-> Bridging ionZn504 <-> His251 ... Chain closureVal394 <-> Asp137 |
probabilistic | |||
|
|
K +31 | Asp137 ... His226 <-> Bridging ionZn504 <-> His251 ... Chain closureVal394 <-> Asp137 |
probabilistic |
Chain Sequence |
DQSHWRYGGDPPWPRVSPACAGRFQSPVDIRPQLAAFCPALRPLELLGFQLPPLPELRLRNNGHSVQLTLPPGLEMALGPGREYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLSTAFARVDEALGRPGGLAVLAAFLEEGPEENSAYEQLLSRLEEIAEEGSETQVPGLDISALLPSDFSRYFQYEGSLTTPPCAQGVIWTVFNQTVMLSAKQLHTLSDTLWGPGDSRLQLNFRATQPLNGRVIEASFPAGV
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 26-253 | 228 | 1-25, 254-258 | 25 | 5 | knot | ||||
| view details |
 |
1.1 | 29-250 | 222 | 1-23, 254-258 | 24-28, 251-253 | 23 | 5 | slipknot |
| sequence length |
258
|
| structure length |
258
|
| publication title |
Biophysical Characterization of Cancer-Related Carbonic Anhydrase IX
doi rcsb |
| molecule tags |
Lyase
|
| molecule keywords |
Carbonic anhydrase 9
|
| source organism |
Homo sapiens
|
| total genus |
 Genus: 68
|
| ec nomenclature |
ec
4.2.1.1: Alcohol dehydrogenase. |
| pdb deposition date | 2020-02-28 |
| KnotProt deposition date | 2020-08-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00194 | Carb_anhydrase | Eukaryotic-type carbonic anhydrase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
