| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 90-134 | 45 | 1-89, 135-249 | 89 | 115 | knot |
Chain Sequence |
QSMLWVGVVSIFPEMFRAISDYGITSRAVKQGLLTLTCWNPRVYTEDRHQTVDDRPFGGGPGMVMKIKPLEGALADARQAAGGRKAKVIYLSPQGRQLTQAGVRELAEEEALILIAGRYEGIDERFIEEHVDEEWSIGDYVLSGGELPAMVLVDAVTRLLPGAL------------DGLLDCPHYTRPEVYADKRVPEVLLSGNHEHIRRWRLQQALGRTWERRADLLDSRSLSGEEQKLLAEYIRQRD
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 89-136 | 48 | 1-88, 137-249 | 88 | 113 | knot | ||||
| view details |
 |
2.1 | 92-151 | 60 | 152-249 | 1-88 | 89-91 | 88 | 97 | slipknot |
| sequence length |
249
|
| structure length |
237
|
| publication title |
Crystal structure of TrmD from Pseudomonas aeruginosa in complex with active-site inhibitor
rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
tRNA (guanine-N(1)-)-methyltransferase
|
| source organism |
Pseudomonas aeruginosa ucbpp-pa14
|
| missing residues |
165-176
|
| total genus |
 Genus: 71
|
| ec nomenclature |
ec
2.1.1.228: Alcohol dehydrogenase. |
| pdb deposition date | 2018-08-08 |
| KnotProt deposition date | 2019-09-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01746 | tRNA_m1G_MT | tRNA (Guanine-1)-methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
