6AFKA

Crystal structure of trmd from pseudomonas aeruginosa in complex with active-site inhibitor
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 90-134 45 1-89, 135-249 89 115 knot
Chain Sequence
QSMLWVGVVSIFPEMFRAISDYGITSRAVKQGLLTLTCWNPRVYTEDRHQTVDDRPFGGGPGMVMKIKPLEGALADARQAAGGRKAKVIYLSPQGRQLTQAGVRELAEEEALILIAGRYEGIDERFIEEHVDEEWSIGDYVLSGGELPAMVLVDAVTRLLPGAL------------DGLLDCPHYTRPEVYADKRVPEVLLSGNHEHIRRWRLQQALGRTWERRADLLDSRSLSGEEQKLLAEYIRQRD
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 89-136 48 1-88, 137-249 88 113 knot
view details
2.1 92-151 60 152-249 1-88 89-91 88 97 slipknot
missing residues 165-176
publication title Crystal structure of TrmD from Pseudomonas aeruginosa in complex with active-site inhibitor
rcsb
structure length 237
molecule tags Transferase
source organism Pseudomonas aeruginosa ucbpp-pa14
sequence length 249
total genus Genus: 71
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
ec nomenclature ec 2.1.1.228: Alcohol dehydrogenase.
pdb deposition date 2018-08-08
KnotProt deposition date 2019-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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