6BAYA

Stigmatella aurantiaca bacterial phytochrome p1, pas-gaf-phy t289h mutant, room temperature structure
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 19-263 245 1-18, 264-505 18 242 knot
Chain Sequence
QEVDLTNCDREPIHIPGAIQPHGVLLVLSEPGLVLTHASENAPAVLGNSAEQLLGAPLGHFIEPSVREPLEADLRSARLKQLNPLKVVWRVDGVDRFFDGIAHRHQGRLILELEPSSHREAVPFLSFFHAVRDGLSRLRDARDLQELCEAVVQEVRGLTGFDRAIIYRFDAEWNGSVIAEARDARADPYLGLHFPASDIPRQARELYQLNWLRIIPTIDYQPARVRALPGHGEPLDLSFSVLRSVSPIHLEYLHNMGVQASMSISLMKDGKLWGLISCHQVSGTRYVPYEVRTACEFLGEVMSSLLAAKEGNEDYDQRIRAKSIHAALLERMAREVDFVSGLASQESGLLELVHAHGAAIHFHGRTTVLGQAPSDEALTGLIEWLGSRTGEGVFCTDRLAREYPEAQAFQEVAAGLMAFSMSRGRNNFVLWFRPEAVQTVNWSGNPTKAVEFDQGGPRLHPRKSFELWKETVRGRCLPWKAYEVEAASELRRSIIDVALQRSEEL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 17-305 289 1-16, 306-505 16 200 knot
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3.2m 17-258 242 1-16 268-505 259-267 16 238 slipknot
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4.1 14-267 254 1-13 274-505 268-273 13 232 slipknot
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3.2m 18-270 253 1-17 279-505 271-278 17 227 slipknot
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3.2m 17-278 262 1-16 282-505 279-281 16 224 slipknot
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3.2m 17-283 267 1-16 306-505 284-305 16 200 slipknot
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3.2 21-302 282 303-505 1-16 17-20 16 202 slipknot
publication title Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome
doi rcsb
structure length 505
molecule tags Signaling protein
source organism Stigmatella aurantiaca dw4/3-1
sequence length 505
total genus Genus: 132
molecule keywords Photoreceptor-histidine kinase BphP
ec nomenclature
pdb deposition date 2017-10-16
KnotProt deposition date 2018-09-25
Image from the rcsb pdb (www.rcsb.org)
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