6PTQA

Dark, room temperature, pcm myxobacterial phytochrome, p2, wild type
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 16-252 237 1-15, 253-482 15 230 knot
Chain Sequence
DLSQCDREPIHLLGGIQSHGVLLAFRGPDRLLEVVSANAQALLGRPPETLLGQPVGRVLPAEVLAQWEPLVARGSVRVVLPAGAYRALLHESDGLTVLELEPAELQPGMEETALEVVRRLVSPLAGVKGTQALLQTAADTVRALTGFDRVMVYRFDADWHGEVLAESKRGGMDGFLGMHFPATDIPVQARALYTRNPLRLIADARARPVPLLPPVVPALGRPLDLSNSALRSVSPVHLEYLRNMGVGASFSLSLLKEGVLWGLIACHHLEPLHISHERRRACEVLTQLLALQLSAEERAAEASEDAHRAALLGQLATAMGEGGTLEEVLEKESERVLALTGAAGVALLLGEEPLLVGCTPAQDEVEALVAWLATQPFQTSFHTDRLGTVYPPLAARADVAAGILAVRLAPAAARFAIWFRPEVARTISWAGNPRKPAEPEPGHQRLHPRGSFQAWEETVRDTSLPWKRADLGAAEGFRGALV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 14-290 277 1-13, 291-482 13 192 knot
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3.2m 14-247 234 1-13 257-482 248-256 13 226 slipknot
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3.2m 14-256 243 1-13 269-482 257-268 13 214 slipknot
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3.2m 14-269 256 1-13 291-482 270-290 13 192 slipknot
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4.1 17-289 273 290-482 1-13 14-16 13 192 slipknot
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3.2 18-300 283 1-16, 480-482 17-17, 301-479 16 3 slipknot
publication title High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
pubmed doi rcsb
structure length 482
molecule tags Signaling protein
source organism Stigmatella aurantiaca dw4/3-1
sequence length 482
total genus Genus: 148
molecule keywords Photoreceptor-histidine kinase BphP
ec nomenclature
pdb deposition date 2019-07-16
KnotProt deposition date 2019-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01590 GAF GAF domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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