| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 16-252 | 237 | 1-15, 253-482 | 15 | 230 | knot |
Chain Sequence |
DLSQCDREPIHLLGGIQSHGVLLAFRGPDRLLEVVSANAQALLGRPPETLLGQPVGRVLPAEVLAQWEPLVARGSVRVVLPAGAYRALLHESDGLTVLELEPAELQPGMEETALEVVRRLVSPLAGVKGTQALLQTAADTVRALTGFDRVMVYRFDADWHGEVLAESKRGGMDGFLGMHFPATDIPVQARALYTRNPLRLIADARARPVPLLPPVVPALGRPLDLSNSALRSVSPVHLEYLRNMGVGASFSLSLLKEGVLWGLIACHHLEPLHISHERRRACEVLTQLLALQLSAEERAAEASEDAHRAALLGQLATAMGEGGTLEEVLEKESERVLALTGAAGVALLLGEEPLLVGCTPAQDEVEALVAWLATQPFQTSFHTDRLGTVYPPLAARADVAAGILAVRLAPAAARFAIWFRPEVARTISWAGNPRKPAEPEPGHQRLHPRGSFQAWEETVRDTSLPWKRADLGAAEGFRGALV
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 14-290 | 277 | 1-13, 291-482 | 13 | 192 | knot | ||||
| view details |
 |
3.2m | 14-247 | 234 | 1-13 | 257-482 | 248-256 | 13 | 226 | slipknot | ||
| view details |
|
3.2m | 14-256 | 243 | 1-13 | 269-482 | 257-268 | 13 | 214 | slipknot | ||
| view details |
|
3.2m | 14-269 | 256 | 1-13 | 291-482 | 270-290 | 13 | 192 | slipknot | ||
| view details |
|
4.1 | 17-289 | 273 | 290-482 | 1-13 | 14-16 | 13 | 192 | slipknot | ||
| view details |
 |
3.2 | 18-300 | 283 | 1-16, 480-482 | 17-17, 301-479 | 16 | 3 | slipknot |
| sequence length |
482
|
| structure length |
482
|
| publication title |
High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
pubmed doi rcsb |
| molecule tags |
Signaling protein
|
| molecule keywords |
Photoreceptor-histidine kinase BphP
|
| source organism |
Stigmatella aurantiaca dw4/3-1
|
| total genus |
 Genus: 148
|
| ec nomenclature | |
| pdb deposition date | 2019-07-16 |
| KnotProt deposition date | 2019-10-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01590 | GAF | GAF domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
