6SG9DH

Head domain of the mt-ssu assemblosome from trypanosoma brucei
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 150
Knot K -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 13-410 398 1-12, 411-538 12 128 knot
Chain Sequence
RKPQNQWEGVYYYSGITKRQRHLILLHRKREREAHMRSFNISRASVLQRLEQLSGDRKQESLPPHVRLDLAVRLAQHGLYQQATPIVDELHHQKALHAGHYALLINALACPRLGQRILHCDAQCDPALTYKLLGDENGEERAQEAYRWFDLALTSLAVDCG------HFVPYLPQGTAAASHITNALMRTLLTCGYTHVAAIPDSVYDRMGSMGISPTISTYELVMLALSLQGNMVEAESILSFLRSHHSEHITVESFNALLLGHREARQFDCCDAIWQELVDRRWPRASPLTAELYLRSIMDHANTPTSEPLQSFANINVVEKKKVPLVLAQMDELGVPRTHLSRVLMDEVEDSLRKFQTYRSRFYEWGRAVKQFDFIEFRRRNGWLYDLHLMKGDIYYD------------------------------------------------------------DTRGLHDRSPTWMNEVPETRYDRLYGVNHPDIAKIGIRRHLNVEYVNRKEVVERDAALMKKTLSSGRRLRHRVESSR
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1m 11-455 445 1-10, 456-538 10 83 knot
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2.1m 16-455 440 456-538 1-10 11-15 10 82 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling