2NWWA

Crystal structure of gltph in complex with tboa
Slipknot S +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 52-313 262 1-51 372-407 314-371 51 36 slipknot
Chain Sequence
YPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 42-298 257 1-41 317-407 299-316 41 91 slipknot
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2.1 42-334 293 1-41 350-407 335-349 41 58 slipknot
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2.1 42-349 308 1-41 356-407 350-355 41 52 slipknot
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3.1 25-359 335 1-24 370-407 360-369 24 38 slipknot
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2.1 40-362 323 1-39 377-407 363-376 39 31 slipknot
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2.1 39-376 338 1-38 378-407 377-377 38 30 slipknot
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3.1 39-319 281 1-8, 335-407 9-38, 320-334 8 73 slipknot
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3.1 42-362 321 1-39, 377-407 40-41, 363-376 39 31 slipknot
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2.1 45-362 318 1-41, 377-407 42-44, 363-376 41 31 slipknot
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2.1 61-311 251 1-45, 336-407 46-60, 312-335 45 72 slipknot
view details
2.1 60-352 293 1-50, 372-407 51-59, 353-371 50 36 slipknot
sequence length 407
structure length 407
publication title Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords 425aa long hypothetical proton glutamate symport protein
source organism Pyrococcus horikoshii
total genus Genus: 137
ec nomenclature
pdb deposition date 2006-11-16
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Proton glutamate symport protein 2nwwA00
2NWXA 2NWWA 3KBCA 2NWLA 1XFHA 3V8FA
chains in the KnotProt database with same CATH superfamily
2NWXA 2NWWA 3KBCA 2NWLA 1XFHA 3V8FA
chains in the KnotProt database with same CATH topology
2NWXA 2NWWA 3KBCA 2NWLA 1XFHA 3V8FA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2NWX A;  2NWW A;  3KBC A;  2NWL A;  1XFH A;  3V8F A; 
#chains in the KnotProt database with same CATH topology
 2NWX A;  2NWW A;  3KBC A;  2NWL A;  1XFH A;  3V8F A; 
#chains in the KnotProt database with same CATH homology
 2NWX A;  2NWW A;  3KBC A;  2NWL A;  1XFH A;  3V8F A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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