3KBCA

Crystal structure of gltph k55c-a364c mutant crosslinked with divalent mercury
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 46-321 276 1-45 339-411 322-338 45 73 slipknot
Chain Sequence
KYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLCMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLCMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 47-312 266 1-46 346-411 313-345 46 66 slipknot
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2.1 40-358 319 1-39 368-411 359-367 39 44 slipknot
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2.1 61-316 256 1-47, 328-411 48-60, 317-327 47 84 slipknot
view details
2.1 60-331 272 1-52, 344-411 53-59, 332-343 52 68 slipknot
sequence length 411
structure length 411
publication title Transport mechanism of a bacterial homologue of glutamate transporters.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords 425aa long hypothetical proton glutamate symport protein
source organism Pyrococcus horikoshii
total genus Genus: 139
ec nomenclature
pdb deposition date 2009-10-20
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Proton glutamate symport protein 3kbcA00
2NWXA 2NWWA 3KBCA 2NWLA 1XFHA 3V8FA
chains in the KnotProt database with same CATH superfamily
2NWXA 2NWWA 3KBCA 2NWLA 1XFHA 3V8FA
chains in the KnotProt database with same CATH topology
2NWXA 2NWWA 3KBCA 2NWLA 1XFHA 3V8FA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2NWX A;  2NWW A;  3KBC A;  2NWL A;  1XFH A;  3V8F A; 
#chains in the KnotProt database with same CATH topology
 2NWX A;  2NWW A;  3KBC A;  2NWL A;  1XFH A;  3V8F A; 
#chains in the KnotProt database with same CATH homology
 2NWX A;  2NWW A;  3KBC A;  2NWL A;  1XFH A;  3V8F A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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