2O7U | KnotProt

Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!

Knot K 2x +3₁

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The Resolver thinks Pdb

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reading 329 atoms

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reading 329 atoms

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Help Knotting data interpretation Full screen

				Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details			+ 3₁	19-161	143	1-18, 162-220			18	58	slipknot
view details			+ 3₁	20-161	142	1-19, 162-207			19	45	slipknot

			Fingerprint	Knot forming loop	Loop type
knots details			K +3₁	Asp63 <-> Bridging ionFe500 <-> Tyr188 ... Cys331 <-> Cys137 ... Asp63	ion-based	color sequence
knots details			K +3₁	Asp63 <-> Bridging ionFe500 <-> Tyr188 ... Cys227 <-> Cys241 ... Cys331 <-> Cys137 ... Asp63	ion-based	color sequence

Chain Sequence

DKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVEHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLFEDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTC

sequence length	329
structure length	329
publication title	Structures of two mutants that probe the role in iron release of the dilysine pair in the N-lobe of human transferrin. pubmed doi rcsb
molecule tags	Metal transport
molecule keywords	Serotransferrin
source organism	Homo sapiens
total genus	Genus: 92
ec nomenclature
pdb deposition date	2006-12-11
KnotProt deposition date	2018-11-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00405	Transferrin	Transferrin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein; domain 2	Periplasmic binding protein-like II	2o7uA01
3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein; domain 2	Periplasmic binding protein-like II	2o7uA02
3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein; domain 2	Periplasmic binding protein-like II	2o7uA01
3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein; domain 2	Periplasmic binding protein-like II	2o7uA02

3O97A 2O7UA 1OQGA 1N84A 3FGSA 1FQEA 1DTGA 1A8EA 1A8FA 1FQFA 1JQFA 2O84X 1N7WA 1OQHA 1D4NA 1D3KA 1N7XA 1B3EA
chains in the KnotProt database with same CATH superfamily

3O97A 2O7UA 1OQGA 1N84A 3FGSA 1FQEA 1DTGA 1A8EA 1A8FA 1FQFA 1JQFA 2O84X 1N7WA 1OQHA 1D4NA 1D3KA 1N7XA 1B3EA
chains in the KnotProt database with same CATH topology

3O97A 2O7UA 1OQGA 1N84A 3FGSA 1FQEA 1DTGA 1A8EA 1A8FA 1FQFA 1JQFA 2O84X 1N7WA 1OQHA 1D4NA 1D3KA 1N7XA 1B3EA
chains in the KnotProt database with same CATH homology

#chains in the KnotProt database with same CATH superfamily
 3O97 A;  2O7U A;  1OQG A;  1N84 A;  3FGS A;  1FQE A;  1DTG A;  1A8E A;  1A8F A;  1FQF A;  1JQF A;  2O84 X;  1N7W A;  1OQH A;  1D4N A;  1D3K A;  1N7X A;  1B3E A; 
#chains in the KnotProt database with same CATH topology
 3O97 A;  2O7U A;  1OQG A;  1N84 A;  3FGS A;  1FQE A;  1DTG A;  1A8E A;  1A8F A;  1FQF A;  1JQF A;  2O84 X;  1N7W A;  1OQH A;  1D4N A;  1D3K A;  1N7X A;  1B3E A; 
#chains in the KnotProt database with same CATH homology
 3O97 A;  2O7U A;  1OQG A;  1N84 A;  3FGS A;  1FQE A;  1DTG A;  1A8E A;  1A8F A;  1FQF A;  1JQF A;  2O84 X;  1N7W A;  1OQH A;  1D4N A;  1D3K A;  1N7X A;  1B3E A;

2O84X 3S9LC 3S9MC 1BP5A 1BTJA
similar chains in the KnotProt database (40% sequence similarity)

3QYTA 3S9NC 3V83A 3V8XB
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
2O84 X; 3S9L C; 3S9M C; 
#similar chains, but unknotted
1BTJ A; 
#similar chains in the pdb database (40% sequence similarity)
3QYT A; 3S9N C; 3V83 A; 3V8X B;

2O7UA

Knot K 2x +31

Chain Sequence

pfam database annotations

Knot K 2x +3₁