| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 52-313 | 262 | 1-51 | 372-407 | 314-371 | 51 | 36 | slipknot |
Chain Sequence |
YPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 42-298 | 257 | 1-41 | 317-407 | 299-316 | 41 | 91 | slipknot | ||
| view details |
|
2.1 | 42-334 | 293 | 1-41 | 350-407 | 335-349 | 41 | 58 | slipknot | ||
| view details |
|
2.1 | 42-349 | 308 | 1-41 | 356-407 | 350-355 | 41 | 52 | slipknot | ||
| view details |
 |
3.1 | 25-359 | 335 | 1-24 | 370-407 | 360-369 | 24 | 38 | slipknot | ||
| view details |
|
2.1 | 40-362 | 323 | 1-39 | 377-407 | 363-376 | 39 | 31 | slipknot | ||
| view details |
|
2.1 | 39-376 | 338 | 1-38 | 378-407 | 377-377 | 38 | 30 | slipknot | ||
| view details |
|
3.1 | 39-319 | 281 | 1-8, 335-407 | 9-38, 320-334 | 8 | 73 | slipknot | |||
| view details |
|
3.1 | 42-362 | 321 | 1-39, 377-407 | 40-41, 363-376 | 39 | 31 | slipknot | |||
| view details |
|
2.1 | 45-362 | 318 | 1-41, 377-407 | 42-44, 363-376 | 41 | 31 | slipknot | |||
| view details |
|
2.1 | 61-311 | 251 | 1-45, 336-407 | 46-60, 312-335 | 45 | 72 | slipknot | |||
| view details |
|
2.1 | 60-352 | 293 | 1-50, 372-407 | 51-59, 353-371 | 50 | 36 | slipknot |
| sequence length |
407
|
| structure length |
407
|
| publication title |
Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter.
pubmed doi rcsb |
| molecule tags |
Transport protein
|
| molecule keywords |
425aa long hypothetical proton glutamate symport protein
|
| source organism |
Pyrococcus horikoshii
|
| total genus |
 Genus: 137
|
| ec nomenclature | |
| pdb deposition date | 2006-11-16 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00375 | SDF | Sodium:dicarboxylate symporter family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Proton glutamate symport protein | Proton glutamate symport protein |
#chains in the KnotProt database with same CATH superfamily 1XFH A; 2NWX A; 3KBC A; 3V8F A; 2NWL A; 2NWW A; #chains in the KnotProt database with same CATH topology 1XFH A; 2NWX A; 3KBC A; 3V8F A; 2NWL A; 2NWW A; #chains in the KnotProt database with same CATH homology 1XFH A; 2NWX A; 3KBC A; 3V8F A; 2NWL A; 2NWW A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
