| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 44-319 | 276 | 1-43 | 338-410 | 320-337 | 43 | 73 | slipknot |
Chain Sequence |
YIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYCMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYACILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 45-309 | 265 | 1-44 | 345-410 | 310-344 | 44 | 66 | slipknot | ||
| view details |
|
2.1 | 42-357 | 316 | 1-36, 367-410 | 37-41, 358-366 | 36 | 44 | slipknot | |||
| view details |
 |
1.1 | 49-329 | 281 | 1-44, 338-410 | 45-48, 330-337 | 44 | 73 | slipknot | |||
| view details |
|
1.1 | 57-316 | 260 | 1-47, 326-410 | 48-56, 317-325 | 47 | 85 | slipknot | |||
| view details |
|
1.1 | 60-326 | 267 | 1-49, 342-410 | 50-59, 327-341 | 49 | 69 | slipknot | |||
| view details |
|
1.1 | 59-360 | 302 | 1-52, 368-410 | 53-58, 361-367 | 52 | 43 | slipknot |
| sequence length |
410
|
| structure length |
410
|
| publication title |
Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog.
pubmed doi rcsb |
| molecule tags |
Transport protein
|
| molecule keywords |
sodium-coupled L-aspartate transporter
|
| source organism |
Pyrococcus horikoshii
|
| total genus |
 Genus: 134
|
| ec nomenclature | |
| pdb deposition date | 2011-12-22 |
| KnotProt deposition date | 2014-08-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00375 | SDF | Sodium:dicarboxylate symporter family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Proton glutamate symport protein | Proton glutamate symport protein |
#chains in the KnotProt database with same CATH superfamily 3V8F A; 1XFH A; 3KBC A; 2NWL A; 2NWW A; 2NWX A; #chains in the KnotProt database with same CATH topology 3V8F A; 1XFH A; 3KBC A; 2NWL A; 2NWW A; 2NWX A; #chains in the KnotProt database with same CATH homology 3V8F A; 1XFH A; 3KBC A; 2NWL A; 2NWW A; 2NWX A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
