| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 46-321 | 276 | 1-45 | 339-411 | 322-338 | 45 | 73 | slipknot |
Chain Sequence |
KYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLCMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLCMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 47-312 | 266 | 1-46 | 346-411 | 313-345 | 46 | 66 | slipknot | ||
| view details |
 |
2.1 | 40-358 | 319 | 1-39 | 368-411 | 359-367 | 39 | 44 | slipknot | ||
| view details |
|
2.1 | 61-316 | 256 | 1-47, 328-411 | 48-60, 317-327 | 47 | 84 | slipknot | |||
| view details |
|
2.1 | 60-331 | 272 | 1-52, 344-411 | 53-59, 332-343 | 52 | 68 | slipknot |
| sequence length |
411
|
| structure length |
411
|
| publication title |
Transport mechanism of a bacterial homologue of glutamate transporters.
pubmed doi rcsb |
| molecule tags |
Transport protein
|
| molecule keywords |
425aa long hypothetical proton glutamate symport protein
|
| source organism |
Pyrococcus horikoshii
|
| total genus |
 Genus: 139
|
| ec nomenclature | |
| pdb deposition date | 2009-10-20 |
| KnotProt deposition date | 2014-08-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00375 | SDF | Sodium:dicarboxylate symporter family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Proton glutamate symport protein | Proton glutamate symport protein |
#chains in the KnotProt database with same CATH superfamily 2NWW A; 3V8F A; 3KBC A; 2NWX A; 2NWL A; 1XFH A; #chains in the KnotProt database with same CATH topology 2NWW A; 3V8F A; 3KBC A; 2NWX A; 2NWL A; 1XFH A; #chains in the KnotProt database with same CATH homology 2NWW A; 3V8F A; 3KBC A; 2NWX A; 2NWL A; 1XFH A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
