1WOIA

Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
Slipknot S +31 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 15-152 138 1-12, 281-303 13-14, 153-280 12 23 slipknot
Chain Sequence
GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 16-231 216 1-10, 244-303 11-15, 232-243 10 60 slipknot
view details
2.1 17-123 107 1-11, 135-303 12-16, 124-134 11 169 slipknot
view details
2.1 17-146 130 1-11, 158-303 12-16, 147-157 11 146 slipknot
publication title Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
pubmed doi rcsb
structure length 303
molecule tags Hydrolase
source organism Deinococcus radiodurans
sequence length 303
total genus Genus: 114
molecule keywords agmatinase
ec nomenclature ec 3.5.3.11: Agmatinase.
pdb deposition date 2004-08-18
KnotProt deposition date 2014-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Arginase; Chain A 1woiA00
1GQ6A 4DZ4A 1GQ7A 1WOHA 1WOGA 1WOIA
chains in the KnotProt database with same CATH superfamily
1GQ6A 4DZ4A 1GQ7A 1WOHA 1WOGA 1WOIA
chains in the KnotProt database with same CATH topology
1GQ6A 4DZ4A 1GQ7A 1WOHA 1WOGA 1WOIA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1GQ6 A;  4DZ4 A;  1GQ7 A;  1WOH A;  1WOG A;  1WOI A; 
#chains in the KnotProt database with same CATH topology
 1GQ6 A;  4DZ4 A;  1GQ7 A;  1WOH A;  1WOG A;  1WOI A; 
#chains in the KnotProt database with same CATH homology
 1GQ6 A;  4DZ4 A;  1GQ7 A;  1WOH A;  1WOG A;  1WOI A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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