KnotProt 2.0: A database of proteins with knots and slipknots

Found 61 chains in Knotoided chains table. Displaying 1 - 61. Applied filters: Probabilistic

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Knots
Knotoids

Search results query: topological notation for knotoids: K 2.1, 1.1

#pdbid|chain|deposition date|is S/K-not|(slip)knot types;
      
  7lnh|A|2022-05-17|K|2.1 1.1;
  7loo|A|2021-12-10|K|2.1 1.1;
  7ock|B|2021-07-28|K|2.1 1.1;
  6yj3|A|2021-03-13|K|2.1 1.1;
  6ufb|A|2020-08-22|K|2.1 1.1;
  6km0|A|2020-08-20|K|2.1 1.1;
  6km1|A|2020-08-20|K|2.1 1.1;
  6km2|A|2020-08-20|K|2.1 1.1;
  6km3|A|2020-08-20|K|2.1 1.1;
  6km4|A|2020-08-20|K|2.1 1.1;
  6rmx|A|2020-08-10|K|2.1 1.1;
  6wq9|A|2020-08-06|K|2.1 1.1;
  6t7u|A|2020-08-05|K|2.1 1.1;
  6rhj|A|2020-08-04|K|2.1 1.1;
  6ouf|A|2020-08-04|K|2.1 1.1;
  6otm|A|2020-08-04|K|2.1 1.1;
  6otq|A|2020-08-04|K|2.1 1.1;
  6oui|A|2020-08-04|K|2.1 1.1;
  6oud|A|2020-08-04|K|2.1 1.1;
  6otp|A|2020-08-04|K|2.1 1.1;
  6ouj|A|2020-08-04|K|2.1 1.1;
  6oto|A|2020-08-04|K|2.1 1.1;
  6rg4|A|2020-08-04|K|2.1 1.1;
  6rhk|A|2020-08-04|K|2.1 1.1;
  6rmy|A|2020-08-04|K|2.1 1.1;
  6rzx|A|2020-08-04|K|2.1 1.1;
  6rm1|A|2020-04-17|K|2.1 1.1;
  1hea|A|2018-10-20|K|2.1 1.1;
  5o07|A|2018-10-19|K|2.1 1.1;
  1ca3|A|2018-10-18|K|2.1 1.1;
  1cnx|A|2018-10-03|K|2.1 1.1;
  5ugh|A|2018-09-13|K|2.1 1.1;
  5a19|A|2018-09-12|K|2.1 1.1;
  1mxa|A|2018-06-11|K|2.1 1.1;
  1cvf|A|2018-06-11|K|2.1 1.1;
  1mxb|A|2018-06-11|K|2.1 1.1;
  1o92|A|2018-06-11|K|2.1 1.1;
  1o9t|A|2018-06-11|K|2.1 1.1;
  1qm4|A|2018-06-11|K|2.1 1.1;
  1rg9|A|2018-06-11|K|2.1 1.1;
  2hd6|A|2018-06-11|K|2.1 1.1;
  2p02|A|2018-06-11|K|2.1 1.1;
  3s82|A|2018-06-11|K|2.1 1.1;
  3tde|A|2018-06-11|K|2.1 1.1;
  4ktt|A|2018-06-11|K|2.1 1.1;
  4ktt|B|2018-06-11|K|2.1 1.1;
  4ktt|C|2018-06-11|K|2.1 1.1;
  4ktv|B|2018-06-11|K|2.1 1.1;
  4ndn|A|2018-06-11|K|2.1 1.1;
  4ndn|D|2018-06-11|K|2.1 1.1;
  4odj|A|2018-06-11|K|2.1 1.1;
  5a1i|A|2018-06-11|K|2.1 1.1;
  5m78|A|2018-06-11|K|2.1 1.1;
  5nxv|A|2018-06-11|K|2.1 1.1;
  5nya|A|2018-06-11|K|2.1 1.1;
  5t8t|A|2018-06-11|K|2.1 1.1;
  5y2s|A|2018-06-11|K|2.1 1.1;
  1xra|A|2018-06-11|K|2.1 1.1;
  1xrb|A|2018-06-11|K|2.1 1.1;
  1xrc|A|2018-06-11|K|2.1 1.1;
  1yo2|A|2018-06-11|K|2.1 1.1;

Knotoid types		pdb	Title
K 2.1, 1.1		7lnhA	S-adenosylmethionine synthetase co-crystallized with uppnhp
K 2.1, 1.1		7looA	S-adenosyl methionine transferase cocrystallized with atp
K 2.1, 1.1		7ockB	Mat in complex with samh
K 2.1, 1.1		6yj3A	Metala-carborane di-propyl-sulfonamide
K 2.1, 1.1		6ufbA	Carbonic anhydrase 2 with inhibitor (2z)-2-benzylidene-3-oxo-n-(4-sulfamoylphenyl)butanamide (11a/d1)
K 2.1, 1.1		6km0A	Human carbonic anhydrase ii v143i variant 07 atm co2
K 2.1, 1.1		6km1A	Human carbonic anhydrase ii v143i variant 13 atm co2
K 2.1, 1.1		6km2A	Human carbonic anhydrase ii v143i variant 15 atm co2
K 2.1, 1.1		6km3A	Human carbonic anhydrase ii native 00 atm co2
K 2.1, 1.1		6km4A	Human carbonic anhydrase ii native 07 atm co2
K 2.1, 1.1		6rmxA	Human carbonic anhydrase ii mutant t199v bound by 2-[(1s)-2,3-dihydro-1h-inden-1-ylamino]-3,5,6-trifluoro-4-[(2-hydroxyethyl)thio]benzenesulfonamide
K 2.1, 1.1		6wq9A	Carbonic anhydrase ii complexed with 3-((2-((naphthalen-2-ylmethyl)(4-sulfamoylphenethyl)amino)-2-oxoethyl)(phenethyl)amino)propanoic acid
K 2.1, 1.1		6t7uA	Carborane inhibitor of carbonic anhydrase ix
K 2.1, 1.1		6rhjA	Crystal structure of human carbonic anhydrase isozyme ii with 4-(4-benzyl-1,4-diazepane-1-carbonyl)benzenesulfonamide
K 2.1, 1.1		6oufA	Carbonic anhydrase ix mimic complexed with benzene sulfonamide mb11-707a
K 2.1, 1.1		6otmA	Carbonic anhydrase ix mimic complexed with ureic benzene sulfonamide mb10-586b
K 2.1, 1.1		6otqA	Carbonic anhydrase ii complexed with ureic benzene sulfonamide mb10-596b
K 2.1, 1.1		6ouiA	Carbonic anhydrase ix mimic complexed with benzene sulfonamide mb11-710a
K 2.1, 1.1		6oudA	Carbonic anhydrase ix mimic complexed with benzene sulfonamide mb11-694b
K 2.1, 1.1		6otpA	Carbonic anhydrase ii complexed with ureic benzene sulfonamide mb10-586b
K 2.1, 1.1		6oujA	Carbonic anhydrase ii complexed with benzene sulfonamide mb11-689a
K 2.1, 1.1		6otoA	Carbonic anhydrase ii complexed with ureic benzene sulfonamide mb9-561b
K 2.1, 1.1		6rg4A	Crystal structure of human carbonic anhydrase ii in complex with (r)-4-(2-benzyl-4-methylpiperazin-1-yl)benzenesulfonamide
K 2.1, 1.1		6rhkA	The crystal structure of human carbonic anhydrase ii in complex with 4-(3-benzylimidazolidine-1-carbonyl)benzenesulfonamide
K 2.1, 1.1		6rmyA	Human carbonic anhydrase ii mutant t199v bound by 3-(cyclooctylamino)-2,5,6-trifluoro-4-[(2-hydroxyethyl)sulfonyl]benzenesulfonamide
K 2.1, 1.1		6rzxA	Carbonic anhydrase caix mimic in complex with inhibitor fbsa
K 2.1, 1.1		6rm1A	Human carbonic anhydrase ii in complex with fragment.
K 2.1, 1.1		1heaA	Carbonic anhydrase ii (carbonate dehydratase) (hca ii) (e.c.4.2.1.1) mutant with leu 198 replaced by arg (l198r)
K 2.1, 1.1		5o07A	The crystal structure of the human carbonic anhydrase ii in complex with a nitroimidazole sulfamate inhibitor
K 2.1, 1.1		1ca3A	Unexpected ph-dependent conformation of his-64, the proton shuttle of carbonic anhydrase ii.
K 2.1, 1.1		1cnxA	Secondary interactions significantly removed from the sulfonamide binding pocket of carbonic anhydrase ii influence binding constants
K 2.1, 1.1	₄	5ughA	Crystal structure of mat2a bound to the allosteric inhibitor pf-02929366
K 2.1, 1.1	₃	5a19A	The structure of mat2a in complex with ppnp.
K 2.1, 1.1	₃	1mxaA	S-adenosylmethionine synthetase with ppi
K 2.1, 1.1		1cvfA	Structural consequences of redesigning a protein-zinc binding site
K 2.1, 1.1	₄	1mxbA	S-adenosylmethionine synthetase with adp
K 2.1, 1.1	₄	1o92A	Methionine adenosyltransferase complexed with adp and a l-methionine analogous
K 2.1, 1.1	₅	1o9tA	Methionine adenosyltransferase complexed with both substrates atp and methionine
K 2.1, 1.1	₅	1qm4A	Methionine adenosyltransferase complexed with a l-methionine analogous
K 2.1, 1.1		1rg9A	S-adenosylmethionine synthetase complexed with sam and ppnp
K 2.1, 1.1		2hd6A	Crystal structure of the human carbonic anhydrase ii in complex with a hypoxia-activatable sulfonamide.
K 2.1, 1.1		2p02A	Crystal structure of the alpha subunit of human s-adenosylmethionine synthetase 2
K 2.1, 1.1	₄	3s82A	Structure of a s-adenosylmethionine synthetase from mycobacterium avium
K 2.1, 1.1	₄	3tdeA	Crystal structure of s-adenosylmethionine synthetase rv1392 from mycobacterium tuberculosis
K 2.1, 1.1	₄	4kttA	Structural insights of mat enzymes: mata2b complexed with sam
K 2.1, 1.1		4kttB	Structural insights of mat enzymes: mata2b complexed with sam
K 2.1, 1.1	₆	4kttC	Structural insights of mat enzymes: mata2b complexed with sam
K 2.1, 1.1		4ktvB	Structural insights of mat enzymes: mata2b complexed with adenosine and pyrophosphate
K 2.1, 1.1	₄	4ndnA	Structural insights of mat enzymes: mata2b complexed with sam and ppnp
K 2.1, 1.1		4ndnD	Structural insights of mat enzymes: mata2b complexed with sam and ppnp
K 2.1, 1.1		4odjA	Crystal structure of a putative s-adenosylmethionine synthetase from cryptosporidium hominis in complex with s-adenosyl-methionine
K 2.1, 1.1		5a1iA	The structure of humab mat2a in complex with same, adenosine, methionine and ppnp.
K 2.1, 1.1		5m78A	Human carbonic anhydrase ii in complex with fragment-like inhibitor.
K 2.1, 1.1		5nxvA	Carbonic anhydrase ii inhibitor ra8
K 2.1, 1.1		5nyaA	Carbonic anhydrase ii inhibitor ra13
K 2.1, 1.1	₅	5t8tA	Crystal structure of a s-adenosylmethionine synthase from neisseria gonorrhoeae with bound amp and magnesium
K 2.1, 1.1		5y2sA	7.0 atm co2-pressurized human carbonic anhydrase ii
K 2.1, 1.1	₃	1xraA	Crystal structure of s-adenosylmethionine synthetase
K 2.1, 1.1	₄	1xrbA	S-adenosylmethionine synthetase (mat, atp: l-methionine s-adenosyltransferase, e.c.2.5.1.6) in which met residues are replaced with selenomethionine residues (mse)
K 2.1, 1.1	₅	1xrcA	Crystal structure of s-adenosylmethionine synthetase
K 2.1, 1.1		1yo2A	Proton transfer from his200 in human carbonic anhydrase ii

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Search results query: topological notation for knotoids: K 2.1, 1.1