| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
-52 | 6-226 | 221 | 1-5, 227-229 | 5 | 3 | knot | ||||
| view details |
 |
-31 | 8-168 | 161 | 1-7 | 225-229 | 169-224 | 7 | 5 | slipknot |
Chain Sequence |
EGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1m | 7-189 | 183 | 1-6 | 215-229 | 190-214 | 6 | 15 | slipknot | ||
| view details |
|
3.1m | 7-215 | 209 | 1-6 | 223-229 | 216-222 | 6 | 7 | slipknot |
| sequence length |
229
|
| structure length |
229
|
| publication title |
Structure of the Ubiquitin Hydrolase UCH-L3 Complexed with a Suicide Substrate
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
Ubiquitin Carboxyl-terminal esterase L3
|
| source organism |
Homo sapiens
|
| total genus |
 Genus: 81
|
| ec nomenclature |
ec
3.4.19.12: Ubiquitinyl hydrolase 1. |
| pdb deposition date | 2004-09-03 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01088 | Peptidase_C12 | Ubiquitin carboxyl-terminal hydrolase, family 1 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Ubiquitin C-terminal Hydrolase UCH-l3 | Ubiquitin C-terminal Hydrolase Uch-l3 |
#chains in the KnotProt database with same CATH superfamily 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A; #chains in the KnotProt database with same CATH topology 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A; #chains in the KnotProt database with same CATH homology 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
