2LENA

Solution structure of uchl1 s18y variant
Knot K -52 -31 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-52 6-220 215 1-5, 221-231 5 11 knot
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-31 5-163 159 1-4 217-231 164-216 4 15 slipknot
Chain Sequence
MQLKPMEINPEMLNKVLYRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAALEHHHHHH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1m 6-161 156 1-5 167-231 162-166 5 65 slipknot
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3.1m 7-183 177 1-6 197-231 184-196 6 35 slipknot
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3.1m 7-201 195 1-6 215-231 202-214 6 17 slipknot
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2.1m 8-205 198 1-6, 209-231 7-7, 206-208 6 23 slipknot
view details
4.4m 8-224 217 225-231 1-2 3-7 2 6 slipknot
sequence length 231
structure length 231
publication title Backbone and side-chain (1)H, (15)N and (13)C resonance assignments of S18Y mutant of ubiquitin carboxy-terminal hydrolase L1
rcsb
molecule tags Hydrolase
molecule keywords Ubiquitin carboxyl-terminal hydrolase isozyme L1
source organism Homo sapiens
total genus Genus: 50
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2011-06-19
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01088 Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.532.10 Alpha Beta 3-Layer(aba) Sandwich Ubiquitin C-terminal Hydrolase UCH-l3 Ubiquitin C-terminal Hydrolase Uch-l3 2lenA00
3RIIA 3IRTA 3KW5A 3IHRA 3RISA 4DM9A 3IFWA 1UCHA 2LENA 2ETLA 1CMXA 3KVFA 3A7SA 1XD3A
chains in the KnotProt database with same CATH superfamily
3RIIA 3IRTA 3KW5A 3IHRA 3RISA 4DM9A 3IFWA 1UCHA 2LENA 2ETLA 1CMXA 3KVFA 3A7SA 1XD3A
chains in the KnotProt database with same CATH topology
3RIIA 3IRTA 3KW5A 3IHRA 3RISA 4DM9A 3IFWA 1UCHA 2LENA 2ETLA 1CMXA 3KVFA 3A7SA 1XD3A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3RII A;  3IRT A;  3KW5 A;  3IHR A;  3RIS A;  4DM9 A;  3IFW A;  1UCH A;  2LEN A;  2ETL A;  1CMX A;  3KVF A;  3A7S A;  1XD3 A; 
#chains in the KnotProt database with same CATH topology
 3RII A;  3IRT A;  3KW5 A;  3IHR A;  3RIS A;  4DM9 A;  3IFW A;  1UCH A;  2LEN A;  2ETL A;  1CMX A;  3KVF A;  3A7S A;  1XD3 A; 
#chains in the KnotProt database with same CATH homology
 3RII A;  3IRT A;  3KW5 A;  3IHR A;  3RIS A;  4DM9 A;  3IFW A;  1UCH A;  2LEN A;  2ETL A;  1CMX A;  3KVF A;  3A7S A;  1XD3 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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