| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
-52 | 5-219 | 215 | 1-4, 220-223 | 4 | 4 | knot | ||||
| view details |
 |
-31 | 6-163 | 158 | 1-5 | 217-223 | 164-216 | 5 | 7 | slipknot |
Chain Sequence |
MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1m | 7-163 | 157 | 1-6 | 171-223 | 164-170 | 6 | 53 | slipknot | ||
| view details |
 |
3.1m | 5-183 | 179 | 1-4 | 194-223 | 184-193 | 4 | 30 | slipknot | ||
| view details |
|
3.1m | 5-194 | 190 | 1-4 | 200-223 | 195-199 | 4 | 24 | slipknot | ||
| view details |
|
3.1m | 9-196 | 188 | 1-8 | 216-223 | 197-215 | 8 | 8 | slipknot | ||
| view details |
|
3.1m | 5-215 | 211 | 1-4 | 217-223 | 216-216 | 4 | 7 | slipknot | ||
| view details |
|
3.1m | 5-216 | 212 | 1-1, 218-223 | 2-4, 217-217 | 1 | 6 | slipknot | |||
| view details |
|
2.1m | 8-171 | 164 | 1-2, 177-223 | 3-7, 172-176 | 2 | 47 | slipknot | |||
| view details |
|
3.1m | 8-183 | 176 | 1-4, 197-223 | 5-7, 184-196 | 4 | 27 | slipknot | |||
| view details |
|
2.1m | 11-204 | 194 | 1-8, 213-223 | 9-10, 205-212 | 8 | 11 | slipknot |
| sequence length |
223
|
| structure length |
223
|
| publication title |
Structural basis for conformational plasticity of the Parkinson's disease-associated ubiquitin hydrolase UCH-L1.
pubmed doi rcsb |
| molecule tags |
Hydrolase, ligase
|
| molecule keywords |
Ubiquitin carboxyl-terminal hydrolase isozyme L1
|
| source organism |
Homo sapiens
|
| total genus |
 Genus: 70
|
| ec nomenclature |
ec
3.4.19.12: Ubiquitinyl hydrolase 1. |
| pdb deposition date | 2005-10-27 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01088 | Peptidase_C12 | Ubiquitin carboxyl-terminal hydrolase, family 1 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Ubiquitin C-terminal Hydrolase UCH-l3 | Ubiquitin C-terminal Hydrolase Uch-l3 |
#chains in the KnotProt database with same CATH superfamily 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A; #chains in the KnotProt database with same CATH topology 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A; #chains in the KnotProt database with same CATH homology 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
