| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
-52 | 6-220 | 215 | 1-5, 221-231 | 5 | 11 | knot | ||||
| view details |
 |
-31 | 5-163 | 159 | 1-4 | 217-231 | 164-216 | 4 | 15 | slipknot |
Chain Sequence |
MQLKPMEINPEMLNKVLYRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAALEHHHHHH
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1m | 6-161 | 156 | 1-5 | 167-231 | 162-166 | 5 | 65 | slipknot | ||
| view details |
 |
3.1m | 7-183 | 177 | 1-6 | 197-231 | 184-196 | 6 | 35 | slipknot | ||
| view details |
|
3.1m | 7-201 | 195 | 1-6 | 215-231 | 202-214 | 6 | 17 | slipknot | ||
| view details |
|
2.1m | 8-205 | 198 | 1-6, 209-231 | 7-7, 206-208 | 6 | 23 | slipknot | |||
| view details |
 |
4.4m | 8-224 | 217 | 225-231 | 1-2 | 3-7 | 2 | 6 | slipknot |
| sequence length |
231
|
| structure length |
231
|
| publication title |
Backbone and side-chain (1)H, (15)N and (13)C resonance assignments of S18Y mutant of ubiquitin carboxy-terminal hydrolase L1
rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
Ubiquitin carboxyl-terminal hydrolase isozyme L1
|
| source organism |
Homo sapiens
|
| total genus |
 Genus: 50
|
| ec nomenclature |
ec
3.4.19.12: Ubiquitinyl hydrolase 1. |
| pdb deposition date | 2011-06-19 |
| KnotProt deposition date | 2014-08-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01088 | Peptidase_C12 | Ubiquitin carboxyl-terminal hydrolase, family 1 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Ubiquitin C-terminal Hydrolase UCH-l3 | Ubiquitin C-terminal Hydrolase Uch-l3 |
#chains in the KnotProt database with same CATH superfamily 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A; #chains in the KnotProt database with same CATH topology 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A; #chains in the KnotProt database with same CATH homology 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
