| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
-52 | 5-220 | 216 | 1-4, 221-223 | 4 | 3 | knot | ||||
| view details |
 |
-31 | 6-162 | 157 | 1-5 | 217-223 | 163-216 | 5 | 7 | slipknot |
Chain Sequence |
MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTMGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
5.2m | 5-220 | 216 | 1-4, 221-223 | 4 | 3 | knot | ||||
| view details |
 |
1.1m | 5-161 | 157 | 1-4 | 165-223 | 162-164 | 4 | 59 | slipknot | ||
| view details |
 |
2.1m | 8-164 | 157 | 1-7 | 170-223 | 165-169 | 7 | 54 | slipknot | ||
| view details |
|
2.1m | 4-173 | 170 | 1-3 | 180-223 | 174-179 | 3 | 44 | slipknot | ||
| view details |
 |
3.1m | 8-183 | 176 | 1-7 | 197-223 | 184-196 | 7 | 27 | slipknot | ||
| view details |
|
3.1m | 5-196 | 192 | 1-4 | 203-223 | 197-202 | 4 | 21 | slipknot | ||
| view details |
|
3.1m | 8-197 | 190 | 1-7 | 217-223 | 198-216 | 7 | 7 | slipknot | ||
| view details |
|
3.1m | 5-216 | 212 | 1-4 | 218-223 | 217-217 | 4 | 6 | slipknot | ||
| view details |
|
2.1m | 7-181 | 175 | 1-2, 184-223 | 3-6, 182-183 | 2 | 40 | slipknot | |||
| view details |
|
2.1m | 10-197 | 188 | 1-7, 215-223 | 8-9, 198-214 | 7 | 9 | slipknot |
| sequence length |
223
|
| structure length |
223
|
| publication title |
Ubiquitin vinyl methyl ester binding orients the misaligned active site of the ubiquitin hydrolase UCHL1 into productive conformation.
pubmed doi rcsb |
| molecule tags |
Hydrolase, ligase
|
| molecule keywords |
Ubiquitin carboxyl-terminal hydrolase isozyme L1
|
| source organism |
Homo sapiens
|
| total genus |
 Genus: 67
|
| ec nomenclature |
ec
3.4.19.12: Ubiquitinyl hydrolase 1. |
| pdb deposition date | 2009-08-24 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01088 | Peptidase_C12 | Ubiquitin carboxyl-terminal hydrolase, family 1 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Ubiquitin C-terminal Hydrolase UCH-l3 | Ubiquitin C-terminal Hydrolase Uch-l3 |
#chains in the KnotProt database with same CATH superfamily 3KVF A; 3A7S A; 3IRT A; 4DM9 A; 1XD3 A; 2LEN A; 3IHR A; 3KW5 A; 3RII A; 3RIS A; 1CMX A; 3IFW A; 2ETL A; 1UCH A; #chains in the KnotProt database with same CATH topology 3KVF A; 3A7S A; 3IRT A; 4DM9 A; 1XD3 A; 2LEN A; 3IHR A; 3KW5 A; 3RII A; 3RIS A; 1CMX A; 3IFW A; 2ETL A; 1UCH A; #chains in the KnotProt database with same CATH homology 3KVF A; 3A7S A; 3IRT A; 4DM9 A; 1XD3 A; 2LEN A; 3IHR A; 3KW5 A; 3RII A; 3RIS A; 1CMX A; 3IFW A; 2ETL A; 1UCH A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
