| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
-52 | 5-219 | 215 | 1-4, 220-223 | 4 | 4 | knot | ||||
| view details |
 |
-31 | 6-164 | 159 | 1-5 | 218-223 | 165-217 | 5 | 6 | slipknot |
Chain Sequence |
MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTMGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1m | 6-165 | 160 | 1-5 | 177-223 | 166-176 | 5 | 47 | slipknot | ||
| view details |
 |
2.1m | 7-179 | 173 | 1-6 | 185-223 | 180-184 | 6 | 39 | slipknot | ||
| view details |
|
3.1m | 5-184 | 180 | 1-4 | 196-223 | 185-195 | 4 | 28 | slipknot | ||
| view details |
|
3.1m | 6-184 | 179 | 1-4, 194-223 | 5-5, 185-193 | 4 | 30 | slipknot | |||
| view details |
|
2.1m | 8-201 | 194 | 1-7 | 215-223 | 202-214 | 7 | 9 | slipknot | ||
| view details |
|
3.1m | 7-184 | 178 | 1-5, 193-223 | 6-6, 185-192 | 5 | 31 | slipknot |
| sequence length |
223
|
| structure length |
223
|
| publication title |
Ubiquitin vinyl methyl ester binding orients the misaligned active site of the ubiquitin hydrolase UCHL1 into productive conformation.
pubmed doi rcsb |
| molecule tags |
Hydrolase/signaling protein
|
| molecule keywords |
Ubiquitin carboxyl-terminal hydrolase isozyme L1
|
| source organism |
Homo sapiens
|
| total genus |
 Genus: 62
|
| ec nomenclature |
ec
3.4.19.12: Ubiquitinyl hydrolase 1. |
| pdb deposition date | 2009-11-30 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01088 | Peptidase_C12 | Ubiquitin carboxyl-terminal hydrolase, family 1 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Ubiquitin C-terminal Hydrolase UCH-l3 | Ubiquitin C-terminal Hydrolase Uch-l3 |
#chains in the KnotProt database with same CATH superfamily 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A; #chains in the KnotProt database with same CATH topology 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A; #chains in the KnotProt database with same CATH homology 3IRT A; 3KVF A; 3A7S A; 1XD3 A; 3IFW A; 3IHR A; 1CMX A; 4DM9 A; 3RII A; 2ETL A; 3KW5 A; 3RIS A; 1UCH A; 2LEN A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
