3JXG | KnotProt

3JXGA

Ca-like domain of mouse ptprg

Image from the <span class='capital'>rcsb pdb</span> (www.rcsb.org)

Warning

Chain breaks within knot 3₁ (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.

Knot K +3₁

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					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	24-261	238	1-23, 262-263			23	2	knot

Chain Sequence

PYWAYSGAYGPEHWVTSSVSCGGSHQSPIDILDHHARVGDEYQELQLDGFDNESSNKTWMKNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSVNGRRFPVEMQIFFYNPDDFDSFQTAISENRIIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHEKETFLDPFILRDLLPASLGSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTE------SVEYLRNNFRPQQALNDRVVSKS

Whole chain analysis

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Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				2.1	21-253	233	1-20, 254-257			20	4	knot

missing residues	235-240
publication title	The protein tyrosine phosphatases PTPRZ and PTPRG bind to distinct members of the contactin family of neural recognition molecules. pubmed doi rcsb
structure length	257
molecule tags	Cell adhesion
source organism	Mus musculus
sequence length	263
molecule keywords	Receptor-type tyrosine-protein phosphatase gamma
ec nomenclature	ec 3.1.3.48: Protein-tyrosine-phosphatase.
pdb deposition date	2009-09-19
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00194	Carb_anhydrase	Eukaryotic-type carbonic anhydrase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.200.10	Alpha Beta	Roll	Carbonic Anhydrase II	Carbonic Anhydrase II	3jxgA00

2X7SA 1Z97A 3N3JA 3MHCA 1KWQA 3F7UA 1ZSAA 2FMGA 1CNGA 1FR4A 1FSNA 1G4OA 2FOSA 1G52A 3DVCA 3IBIA 2EU2A 3MNJA 3IBUA 1UGDA 6CA2A 1Y7WA 1UGFA 1HCBA 3MHOA 3F8EA 2POVA 1FLJA 1RAYA 1BNWA 1CCUA 1BNTA 3DBUA 2FOQA 1AM6A 3M3XA 3LXEA 1RZDA 2WD3A 1BCDA 1CNIA 3PO6A 2HFWA 3GZ0A 1H9NA 3M67A 3M2NA 1BN4A 3MMFA 1CNCA 3MHLA 1YO2A 1FQRA 1CVAA 1CINA 2CBEA 1CAZA 1RZAA 3MDZA 1IF5A 3F4XA 1IF9A 3N4BA 1I9PA 2HFXA 1JCZA 9CA2A 3DA2A 3M5TA 1I91A 12CAA 1G46A 1TG3A 1CAOA 1LG5A 3PYKA 3BL0A 1HEBA 2WEGA 2HL4A 3B1BA 1OKMA 3D92A 3DV7A 3IBNA 3M98A 1CAHA 1EOUA 1AZMA 2HNCA 1G1DA 1UGEA 3BETA 3L14A 2POUA 2W2JA 1F2WA 1YDAA 1CA3A 2FOYA 2CABA 3DC9A 1BV3A 3D0NA 3JXFA 3OKVA 3D8WA 2FNKA 1RZCA 3CAJA 3OIMA 1HUGA 3EFTA 1A42A 3FFPX 2GD8A 2CBCA 1TB0X 1CAKA 3HLJA 1OQ5A 2NN7A 3F7BA 1I90A 1XQ0A 2FMZA 2NNVA 1XEVA 3MHMA 1I9MA 3M5EA 1YDBA 1YO1A 1TG9A 1CIMA 2Q1QA 1URTA 1CZMA 1LGDA 1CA2A 1DCBA 2NMXA 1IF6A 1KOPA 1THKA 3B4FA 2NXRA 3MNIA 2HFYA 2NXTA 3N0NA 3M5SA 2O4ZA 3MHIA 1CNJA 3M96A 3DVDA 1CANA 3CZVA 2AX2A 1UGCA 1ZSCA 1XPZA 3KOKA 1HECA 3FW3A 2NXSA 1J9WA 3M40A 2NWZA 2EZ7A 3DC3A 2NNOA 3HKUA 1HVAA 1G0EA 1I8ZA 3MNAA 1RJ5A 1IF8A 3C7PA 2WEHA 3CA2A 1TBTX 2NWPA 2HOCA 1LZVA 1CVCA 2HD6A 1BNNA 2WD2A 3DD8A 1HCAA 2OSFA 3KONA 3FE4A 1RZBA 3EFIA 1CNXA 3OILA 2NWYA 3JXHC 2FW4A 1FQMA 2CBBA 3DCWA 2X7UA 1CAJA 3M1WA 2ZNCA 1Z93A 1CCSA 1UGGA 1CNYA 2OSMA 1RAZA 1TEUX 1LUGA 1YDCA 3IAIA 3K7KA 1CRAA 2FOUA 2WEOA 3HKQA 1IF7A 2FNNA 1DCAA 1I9OA 1RZEA 2POWA 3P4VA 1CNHA 3ZNCA 1BICA 1FQNA 2NNSA 1V9IC 1BN3A 2AW1A 1CAMA 3N2PA 7CA2A 1TE3X 2F14A 1UGBA 1H4NA 1HEDA 1AVNA 1CVBA 1G4JA 2NN1A 1KEQA 3JXGA 3IBLA 2CA2A 1V9EA 3ML5A 3D93A 2ABEA 1JV0A 1JD0A 1CVFA 2GEHA 3M1JA 3DAZA 1G3ZA 1TTMA 1ZNCA 2NNGA
chains in the KnotProt database with same CATH superfamily

#chains in the KnotProt database with same CATH superfamily
 2X7S A;  1Z97 A;  3N3J A;  3MHC A;  1KWQ A;  3F7U A;  1ZSA A;  2FMG A;  1CNG A;  1FR4 A;  1FSN A;  1G4O A;  2FOS A;  1G52 A;  3DVC A;  3IBI A;  2EU2 A;  3MNJ A;  3IBU A;  1UGD A;  6CA2 A;  1Y7W A;  1UGF A;  1HCB A;  3MHO A;  3F8E A;  2POV A;  1FLJ A;  1RAY A;  1BNW A;  1CCU A;  1BNT A;  3DBU A;  2FOQ A;  1AM6 A;  3M3X A;  3LXE A;  1RZD A;  2WD3 A;  1BCD A;  1CNI A;  3PO6 A;  2HFW A;  3GZ0 A;  1H9N A;  3M67 A;  3M2N A;  1BN4 A;  3MMF A;  1CNC A;  3MHL A;  1YO2 A;  1FQR A;  1CVA A;  1CIN A;  2CBE A;  1CAZ A;  1RZA A;  3MDZ A;  1IF5 A;  3F4X A;  1IF9 A;  3N4B A;  1I9P A;  2HFX A;  1JCZ A;  9CA2 A;  3DA2 A;  3M5T A;  1I91 A;  12CA A;  1G46 A;  1TG3 A;  1CAO A;  1LG5 A;  3PYK A;  3BL0 A;  1HEB A;  2WEG A;  2HL4 A;  3B1B A;  1OKM A;  3D92 A;  3DV7 A;  3IBN A;  3M98 A;  1CAH A;  1EOU A;  1AZM A;  2HNC A;  1G1D A;  1UGE A;  3BET A;  3L14 A;  2POU A;  2W2J A;  1F2W A;  1YDA A;  1CA3 A;  2FOY A;  2CAB A;  3DC9 A;  1BV3 A;  3D0N A;  3JXF A;  3OKV A;  3D8W A;  2FNK A;  1RZC A;  3CAJ A;  3OIM A;  1HUG A;  3EFT A;  1A42 A;  3FFP X;  2GD8 A;  2CBC A;  1TB0 X;  1CAK A;  3HLJ A;  1OQ5 A;  2NN7 A;  3F7B A;  1I90 A;  1XQ0 A;  2FMZ A;  2NNV A;  1XEV A;  3MHM A;  1I9M A;  3M5E A;  1YDB A;  1YO1 A;  1TG9 A;  1CIM A;  2Q1Q A;  1URT A;  1CZM A;  1LGD A;  1CA2 A;  1DCB A;  2NMX A;  1IF6 A;  1KOP A;  1THK A;  3B4F A;  2NXR A;  3MNI A;  2HFY A;  2NXT A;  3N0N A;  3M5S A;  2O4Z A;  3MHI A;  1CNJ A;  3M96 A;  3DVD A;  1CAN A;  3CZV A;  2AX2 A;  1UGC A;  1ZSC A;  1XPZ A;  3KOK A;  1HEC A;  3FW3 A;  2NXS A;  1J9W A;  3M40 A;  2NWZ A;  2EZ7 A;  3DC3 A;  2NNO A;  3HKU A;  1HVA A;  1G0E A;  1I8Z A;  3MNA A;  1RJ5 A;  1IF8 A;  3C7P A;  2WEH A;  3CA2 A;  1TBT X;  2NWP A;  2HOC A;  1LZV A;  1CVC A;  2HD6 A;  1BNN A;  2WD2 A;  3DD8 A;  1HCA A;  2OSF A;  3KON A;  3FE4 A;  1RZB A;  3EFI A;  1CNX A;  3OIL A;  2NWY A;  3JXH C;  2FW4 A;  1FQM A;  2CBB A;  3DCW A;  2X7U A;  1CAJ A;  3M1W A;  2ZNC A;  1Z93 A;  1CCS A;  1UGG A;  1CNY A;  2OSM A;  1RAZ A;  1TEU X;  1LUG A;  1YDC A;  3IAI A;  3K7K A;  1CRA A;  2FOU A;  2WEO A;  3HKQ A;  1IF7 A;  2FNN A;  1DCA A;  1I9O A;  1RZE A;  2POW A;  3P4V A;  1CNH A;  3ZNC A;  1BIC A;  1FQN A;  2NNS A;  1V9I C;  1BN3 A;  2AW1 A;  1CAM A;  3N2P A;  7CA2 A;  1TE3 X;  2F14 A;  1UGB A;  1H4N A;  1HED A;  1AVN A;  1CVB A;  1G4J A;  2NN1 A;  1KEQ A;  3JXG A;  3IBL A;  2CA2 A;  1V9E A;  3ML5 A;  3D93 A;  2ABE A;  1JV0 A;  1JD0 A;  1CVF A;  2GEH A;  3M1J A;  3DAZ A;  1G3Z A;  1TTM A;  1ZNC A;  2NNG A; 
#chains in the KnotProt database with same CATH topology
 2X7S A;  1Z97 A;  3N3J A;  3MHC A;  1KWQ A;  3F7U A;  1ZSA A;  2FMG A;  1CNG A;  1FR4 A;  1FSN A;  1G4O A;  2FOS A;  1G52 A;  3DVC A;  3IBI A;  2EU2 A;  3MNJ A;  3IBU A;  1UGD A;  6CA2 A;  1Y7W A;  1UGF A;  1HCB A;  3MHO A;  3F8E A;  2POV A;  1FLJ A;  1RAY A;  1BNW A;  1CCU A;  1BNT A;  3DBU A;  2FOQ A;  1AM6 A;  3M3X A;  3LXE A;  1RZD A;  2WD3 A;  1BCD A;  1CNI A;  3PO6 A;  2HFW A;  3GZ0 A;  1H9N A;  3M67 A;  3M2N A;  1BN4 A;  3MMF A;  1CNC A;  3MHL A;  1YO2 A;  1FQR A;  1CVA A;  1CIN A;  2CBE A;  1CAZ A;  1RZA A;  3MDZ A;  1IF5 A;  3F4X A;  1IF9 A;  3N4B A;  1I9P A;  2HFX A;  1JCZ A;  9CA2 A;  3DA2 A;  3M5T A;  1I91 A;  12CA A;  1G46 A;  1TG3 A;  1CAO A;  1LG5 A;  3PYK A;  3BL0 A;  1HEB A;  2WEG A;  2HL4 A;  3B1B A;  1OKM A;  3D92 A;  3DV7 A;  3IBN A;  3M98 A;  1CAH A;  1EOU A;  1AZM A;  2HNC A;  1G1D A;  1UGE A;  3BET A;  3L14 A;  2POU A;  2W2J A;  1F2W A;  1YDA A;  1CA3 A;  2FOY A;  2CAB A;  3DC9 A;  1BV3 A;  3D0N A;  3JXF A;  3OKV A;  3D8W A;  2FNK A;  1RZC A;  3CAJ A;  3OIM A;  1HUG A;  3EFT A;  1A42 A;  3FFP X;  2GD8 A;  2CBC A;  1TB0 X;  1CAK A;  3HLJ A;  1OQ5 A;  2NN7 A;  3F7B A;  1I90 A;  1XQ0 A;  2FMZ A;  2NNV A;  1XEV A;  3MHM A;  1I9M A;  3M5E A;  1YDB A;  1YO1 A;  1TG9 A;  1CIM A;  2Q1Q A;  1URT A;  1CZM A;  1LGD A;  1CA2 A;  1DCB A;  2NMX A;  1IF6 A;  1KOP A;  1THK A;  3B4F A;  2NXR A;  3MNI A;  2HFY A;  2NXT A;  3N0N A;  3M5S A;  2O4Z A;  3MHI A;  1CNJ A;  3M96 A;  3DVD A;  1CAN A;  3CZV A;  2AX2 A;  1UGC A;  1ZSC A;  1XPZ A;  3KOK A;  1HEC A;  3FW3 A;  2NXS A;  1J9W A;  3M40 A;  2NWZ A;  2EZ7 A;  3DC3 A;  2NNO A;  3HKU A;  1HVA A;  1G0E A;  1I8Z A;  3MNA A;  1RJ5 A;  1IF8 A;  3C7P A;  2WEH A;  3CA2 A;  1TBT X;  2NWP A;  2HOC A;  1LZV A;  1CVC A;  2HD6 A;  1BNN A;  2WD2 A;  3DD8 A;  1HCA A;  2OSF A;  3KON A;  3FE4 A;  1RZB A;  3EFI A;  1CNX A;  3OIL A;  2NWY A;  3JXH C;  2FW4 A;  1FQM A;  2CBB A;  3DCW A;  2X7U A;  1CAJ A;  3M1W A;  2ZNC A;  1Z93 A;  1CCS A;  1UGG A;  1CNY A;  2OSM A;  1RAZ A;  1TEU X;  1LUG A;  1YDC A;  3IAI A;  3K7K A;  1CRA A;  2FOU A;  2WEO A;  3HKQ A;  1IF7 A;  2FNN A;  1DCA A;  1I9O A;  1RZE A;  2POW A;  3P4V A;  1CNH A;  3ZNC A;  1BIC A;  1FQN A;  2NNS A;  1V9I C;  1BN3 A;  2AW1 A;  1CAM A;  3N2P A;  7CA2 A;  1TE3 X;  2F14 A;  1UGB A;  1H4N A;  1HED A;  1AVN A;  1CVB A;  1G4J A;  2NN1 A;  1KEQ A;  3JXG A;  3IBL A;  2CA2 A;  1V9E A;  3ML5 A;  3D93 A;  2ABE A;  1JV0 A;  1JD0 A;  1CVF A;  2GEH A;  3M1J A;  3DAZ A;  1G3Z A;  1TTM A;  1ZNC A;  2NNG A; 
#chains in the KnotProt database with same CATH homology
 2X7S A;  1Z97 A;  3N3J A;  3MHC A;  1KWQ A;  3F7U A;  1ZSA A;  2FMG A;  1CNG A;  1FR4 A;  1FSN A;  1G4O A;  2FOS A;  1G52 A;  3DVC A;  3IBI A;  2EU2 A;  3MNJ A;  3IBU A;  1UGD A;  6CA2 A;  1Y7W A;  1UGF A;  1HCB A;  3MHO A;  3F8E A;  2POV A;  1FLJ A;  1RAY A;  1BNW A;  1CCU A;  1BNT A;  3DBU A;  2FOQ A;  1AM6 A;  3M3X A;  3LXE A;  1RZD A;  2WD3 A;  1BCD A;  1CNI A;  3PO6 A;  2HFW A;  3GZ0 A;  1H9N A;  3M67 A;  3M2N A;  1BN4 A;  3MMF A;  1CNC A;  3MHL A;  1YO2 A;  1FQR A;  1CVA A;  1CIN A;  2CBE A;  1CAZ A;  1RZA A;  3MDZ A;  1IF5 A;  3F4X A;  1IF9 A;  3N4B A;  1I9P A;  2HFX A;  1JCZ A;  9CA2 A;  3DA2 A;  3M5T A;  1I91 A;  12CA A;  1G46 A;  1TG3 A;  1CAO A;  1LG5 A;  3PYK A;  3BL0 A;  1HEB A;  2WEG A;  2HL4 A;  3B1B A;  1OKM A;  3D92 A;  3DV7 A;  3IBN A;  3M98 A;  1CAH A;  1EOU A;  1AZM A;  2HNC A;  1G1D A;  1UGE A;  3BET A;  3L14 A;  2POU A;  2W2J A;  1F2W A;  1YDA A;  1CA3 A;  2FOY A;  2CAB A;  3DC9 A;  1BV3 A;  3D0N A;  3JXF A;  3OKV A;  3D8W A;  2FNK A;  1RZC A;  3CAJ A;  3OIM A;  1HUG A;  3EFT A;  1A42 A;  3FFP X;  2GD8 A;  2CBC A;  1TB0 X;  1CAK A;  3HLJ A;  1OQ5 A;  2NN7 A;  3F7B A;  1I90 A;  1XQ0 A;  2FMZ A;  2NNV A;  1XEV A;  3MHM A;  1I9M A;  3M5E A;  1YDB A;  1YO1 A;  1TG9 A;  1CIM A;  2Q1Q A;  1URT A;  1CZM A;  1LGD A;  1CA2 A;  1DCB A;  2NMX A;  1IF6 A;  1KOP A;  1THK A;  3B4F A;  2NXR A;  3MNI A;  2HFY A;  2NXT A;  3N0N A;  3M5S A;  2O4Z A;  3MHI A;  1CNJ A;  3M96 A;  3DVD A;  1CAN A;  3CZV A;  2AX2 A;  1UGC A;  1ZSC A;  1XPZ A;  3KOK A;  1HEC A;  3FW3 A;  2NXS A;  1J9W A;  3M40 A;  2NWZ A;  2EZ7 A;  3DC3 A;  2NNO A;  3HKU A;  1HVA A;  1G0E A;  1I8Z A;  3MNA A;  1RJ5 A;  1IF8 A;  3C7P A;  2WEH A;  3CA2 A;  1TBT X;  2NWP A;  2HOC A;  1LZV A;  1CVC A;  2HD6 A;  1BNN A;  2WD2 A;  3DD8 A;  1HCA A;  2OSF A;  3KON A;  3FE4 A;  1RZB A;  3EFI A;  1CNX A;  3OIL A;  2NWY A;  3JXH C;  2FW4 A;  1FQM A;  2CBB A;  3DCW A;  2X7U A;  1CAJ A;  3M1W A;  2ZNC A;  1Z93 A;  1CCS A;  1UGG A;  1CNY A;  2OSM A;  1RAZ A;  1TEU X;  1LUG A;  1YDC A;  3IAI A;  3K7K A;  1CRA A;  2FOU A;  2WEO A;  3HKQ A;  1IF7 A;  2FNN A;  1DCA A;  1I9O A;  1RZE A;  2POW A;  3P4V A;  1CNH A;  3ZNC A;  1BIC A;  1FQN A;  2NNS A;  1V9I C;  1BN3 A;  2AW1 A;  1CAM A;  3N2P A;  7CA2 A;  1TE3 X;  2F14 A;  1UGB A;  1H4N A;  1HED A;  1AVN A;  1CVB A;  1G4J A;  2NN1 A;  1KEQ A;  3JXG A;  3IBL A;  2CA2 A;  1V9E A;  3ML5 A;  3D93 A;  2ABE A;  1JV0 A;  1JD0 A;  1CVF A;  2GEH A;  3M1J A;  3DAZ A;  1G3Z A;  1TTM A;  1ZNC A;  2NNG A;

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similar chains in the KnotProt database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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How to cite

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling

3JXGA

Knot K +31

Chain Sequence

pfam database annotations

Knot K +3₁