1O93A

Methionine adenosyltransferase complexed with atp and a l-methionine analogous
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 117
Alphaknot: P13444
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 15-278 264 1-14, 279-380 14 102 knot
Chain Sequence
GAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSP------------EDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSKKTERELLEVVNKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPKKLVF
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 12-272 261 1-11 328-368 273-327 11 41 slipknot
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2.1 19-266 248 1-2, 332-368 3-18, 267-331 2 37 slipknot
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1.1 16-236 221 1-4, 246-368 5-15, 237-245 4 123 slipknot
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2.1 19-355 337 1-4, 366-368 5-18, 356-365 4 3 slipknot
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2.1 18-342 325 1-5, 356-368 6-17, 343-355 5 13 slipknot
sequence length 380
structure length 368
publication title Crystal Structures of Methionine Adenosyltransferase Complexed with Substrates and Products Reveal the Methionine-ATP Recognition and Give Insights Into the Catalytic Mechanism
pubmed doi rcsb
molecule tags Transferase
molecule keywords S-ADENOSYLMETHIONINE SYNTHETASE
source organism Rattus norvegicus
missing residues 101-112
total genus Genus: 117
ec nomenclature ec 2.5.1.6: Methionine adenosyltransferase.
pdb deposition date 2002-12-10
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00438 S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.10 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 GMP Synthetase; Chain A, domain 3 1o93A01
3.30.300.10 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 GMP Synthetase; Chain A, domain 3 1o93A03
3.30.300.10 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 GMP Synthetase; Chain A, domain 3 1o93A02
1QM4A 1O90A 1O92A 1XRBA 1XRCA 2OBVA 1FUGA 1MXCA 1XRAA 2P02A 1RG9A 1O9TA 3IMLA 1MXBA 1MXAA 1P7LA 1O93A
chains in the KnotProt database with same CATH superfamily
1QM4A 1O90A 1O92A 1XRBA 1XRCA 2OBVA 1FUGA 1MXCA 1XRAA 2P02A 1RG9A 1O9TA 3IMLA 1MXBA 1MXAA 1P7LA 1O93A
chains in the KnotProt database with same CATH topology
1QM4A 1O90A 1O92A 1XRBA 1XRCA 2OBVA 1FUGA 1MXCA 1XRAA 2P02A 1RG9A 1O9TA 3IMLA 1MXBA 1MXAA 1P7LA 1O93A
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1QM4 A;  1O90 A;  1O92 A;  1XRB A;  1XRC A;  2OBV A;  1FUG A;  1MXC A;  1XRA A;  2P02 A;  1RG9 A;  1O9T A;  3IML A;  1MXB A;  1MXA A;  1P7L A;  1O93 A; 
#chains in the KnotProt database with same CATH topology
 1QM4 A;  1O90 A;  1O92 A;  1XRB A;  1XRC A;  2OBV A;  1FUG A;  1MXC A;  1XRA A;  2P02 A;  1RG9 A;  1O9T A;  3IML A;  1MXB A;  1MXA A;  1P7L A;  1O93 A; 
#chains in the KnotProt database with same CATH homology
 1QM4 A;  1O90 A;  1O92 A;  1XRB A;  1XRC A;  2OBV A;  1FUG A;  1MXC A;  1XRA A;  2P02 A;  1RG9 A;  1O9T A;  3IML A;  1MXB A;  1MXA A;  1P7L A;  1O93 A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling