| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 15-270 | 256 | 1-14, 271-380 | 14 | 110 | knot |
Chain Sequence |
GTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKKLKY
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 18-277 | 260 | 1-3, 349-380 | 4-17, 278-348 | 3 | 32 | slipknot | |||
| view details |
|
2.1 | 18-367 | 350 | 368-380 | 1-4 | 5-17 | 4 | 12 | slipknot | ||
| view details |
 |
1.1 | 17-265 | 249 | 1-5, 277-380 | 6-16, 266-276 | 5 | 104 | slipknot | |||
| view details |
|
1.1 | 18-352 | 335 | 1-6, 366-380 | 7-17, 353-365 | 6 | 15 | slipknot |
| sequence length |
380
|
| structure length |
380
|
| publication title |
Crystal structure of the alpha subunit of human S-adenosylmethionine synthetase 2
rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
S-adenosylmethionine synthetase isoform type-2
|
| source organism |
Homo sapiens
|
| total genus |
 Genus: 142
|
| ec nomenclature |
ec
2.5.1.6: Methionine adenosyltransferase. |
| pdb deposition date | 2007-02-28 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00438 | S-AdoMet_synt_N | S-adenosylmethionine synthetase, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 |
#chains in the KnotProt database with same CATH superfamily 1MXA A; 1XRC A; 1QM4 A; 1FUG A; 1O90 A; 1MXB A; 3IML A; 1RG9 A; 1O92 A; 1XRB A; 2OBV A; 2P02 A; 1O9T A; 1P7L A; 1MXC A; 1O93 A; 1XRA A; #chains in the KnotProt database with same CATH topology 1MXA A; 1XRC A; 1QM4 A; 1FUG A; 1O90 A; 1MXB A; 3IML A; 1RG9 A; 1O92 A; 1XRB A; 2OBV A; 2P02 A; 1O9T A; 1P7L A; 1MXC A; 1O93 A; 1XRA A; #chains in the KnotProt database with same CATH homology 1MXA A; 1XRC A; 1QM4 A; 1FUG A; 1O90 A; 1MXB A; 3IML A; 1RG9 A; 1O92 A; 1XRB A; 2OBV A; 2P02 A; 1O9T A; 1P7L A; 1MXC A; 1O93 A; 1XRA A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
