| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 19-271 | 253 | 1-18, 272-384 | 18 | 113 | knot |
Chain Sequence |
FQSMGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVHLDRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDSKTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPRKLVF
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 23-284 | 262 | 1-8, 312-384 | 9-22, 285-311 | 8 | 73 | slipknot | |||
| view details |
|
2.1 | 23-311 | 289 | 1-8, 355-384 | 9-22, 312-354 | 8 | 30 | slipknot | |||
| view details |
|
2.1 | 24-295 | 272 | 1-22, 350-384 | 23-23, 296-349 | 22 | 35 | slipknot |
| sequence length |
384
|
| structure length |
384
|
| publication title |
Crystal structure of the human S-adenosylmethionine synthetase 1 in complex with the product.
rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
S-adenosylmethionine synthetase isoform type-1
|
| source organism |
Homo sapiens
|
| total genus |
 Genus: 139
|
| ec nomenclature |
ec
2.5.1.6: Methionine adenosyltransferase. |
| pdb deposition date | 2006-12-20 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00438 | S-AdoMet_synt_N | S-adenosylmethionine synthetase, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 |
#chains in the KnotProt database with same CATH superfamily 2P02 A; 3IML A; 2OBV A; 1FUG A; 1MXB A; 1O93 A; 1QM4 A; 1O9T A; 1O90 A; 1XRB A; 1O92 A; 1XRC A; 1MXC A; 1RG9 A; 1P7L A; 1MXA A; 1XRA A; #chains in the KnotProt database with same CATH topology 2P02 A; 3IML A; 2OBV A; 1FUG A; 1MXB A; 1O93 A; 1QM4 A; 1O9T A; 1O90 A; 1XRB A; 1O92 A; 1XRC A; 1MXC A; 1RG9 A; 1P7L A; 1MXA A; 1XRA A; #chains in the KnotProt database with same CATH homology 2P02 A; 3IML A; 2OBV A; 1FUG A; 1MXB A; 1O93 A; 1QM4 A; 1O9T A; 1O90 A; 1XRB A; 1O92 A; 1XRC A; 1MXC A; 1RG9 A; 1P7L A; 1MXA A; 1XRA A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
