3IMLA

Crystal structure of s-adenosylmethionine synthetase from burkholderia pseudomallei
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 128
Knot K +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 14-269 256 1-13, 270-389 13 120 knot
Chain Sequence
SMANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYD---------GCAVLVAYDKQSPNLDQGAGDQ------------GLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGKPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRPIYEKTAAYGHFGREEPEFSWEAADKALALAEAAGV
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 11-225 215 1-10 237-368 226-236 10 132 slipknot
view details
2.1 11-332 322 1-10 348-368 333-347 10 21 slipknot
view details
2.1 24-259 236 1-7, 322-368 8-23, 260-321 7 47 slipknot
view details
2.1 24-321 298 1-7, 329-368 8-23, 322-328 7 40 slipknot
view details
2.1 22-352 331 353-368 1-7 8-21 7 15 slipknot
sequence length 389
structure length 368
publication title Combining functional and structural genomics to sample the essential Burkholderia structome.
pubmed doi rcsb
molecule tags Transferase
molecule keywords S-adenosylmethionine synthetase
source organism Burkholderia pseudomallei
missing residues 82-90, 104-115
total genus Genus: 128
ec nomenclature ec 2.5.1.6: Methionine adenosyltransferase.
pdb deposition date 2009-08-10
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00438 S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.300.10 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 GMP Synthetase; Chain A, domain 3 3imlA03
3.30.300.10 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 GMP Synthetase; Chain A, domain 3 3imlA01
3.30.300.10 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 GMP Synthetase; Chain A, domain 3 3imlA02
2P02A 3IMLA 2OBVA 1FUGA 1MXBA 1O93A 1QM4A 1O9TA 1O90A 1XRBA 1O92A 1XRCA 1MXCA 1RG9A 1P7LA 1MXAA 1XRAA
chains in the KnotProt database with same CATH superfamily
2P02A 3IMLA 2OBVA 1FUGA 1MXBA 1O93A 1QM4A 1O9TA 1O90A 1XRBA 1O92A 1XRCA 1MXCA 1RG9A 1P7LA 1MXAA 1XRAA
chains in the KnotProt database with same CATH topology
2P02A 3IMLA 2OBVA 1FUGA 1MXBA 1O93A 1QM4A 1O9TA 1O90A 1XRBA 1O92A 1XRCA 1MXCA 1RG9A 1P7LA 1MXAA 1XRAA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 2P02 A;  3IML A;  2OBV A;  1FUG A;  1MXB A;  1O93 A;  1QM4 A;  1O9T A;  1O90 A;  1XRB A;  1O92 A;  1XRC A;  1MXC A;  1RG9 A;  1P7L A;  1MXA A;  1XRA A; 
#chains in the KnotProt database with same CATH topology
 2P02 A;  3IML A;  2OBV A;  1FUG A;  1MXB A;  1O93 A;  1QM4 A;  1O9T A;  1O90 A;  1XRB A;  1O92 A;  1XRC A;  1MXC A;  1RG9 A;  1P7L A;  1MXA A;  1XRA A; 
#chains in the KnotProt database with same CATH homology
 2P02 A;  3IML A;  2OBV A;  1FUG A;  1MXB A;  1O93 A;  1QM4 A;  1O9T A;  1O90 A;  1XRB A;  1O92 A;  1XRC A;  1MXC A;  1RG9 A;  1P7L A;  1MXA A;  1XRA A;
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling